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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_04608.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | Trihelix | ||||||||
Protein Properties | Length: 224aa MW: 25071.3 Da PI: 6.6847 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 32.9 | 1.7e-10 | 9 | 72 | 21 | 86 |
trihelix 21 lrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 l+rg+l++++W+ev++++ g ++ +qCk++++ l+k+yk +k+ ++ s++ +f++l+ Rsa1.0_04608.1_g00001.1 9 LSRGNLRQNDWKEVADAVnsrhGGNGQPKTDVQCKNRIDTLKKKYKTEKAKPSS------SSWCFFERLD 72 6899**************97555566789999****************998886......5799**9996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.3E-17 | 6 | 73 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MPTPRYVHLS RGNLRQNDWK EVADAVNSRH GGNGQPKTDV QCKNRIDTLK KKYKTEKAKP 60 SSSSWCFFER LDFLIGPAAA KKSTAAGAFR SPVTKPAGSV LSGSSLNDDD EDDEDDDDVE 120 GDWGFVARKH RRVEGVVDRS VGEGEGSSCR ELARAILKLG EVYERIESAK QGMMIELEKQ 180 RMEAANEIEL QRMNMLMDMQ MELEKSKLGK HKIDIDSHTV LKTG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_04608.1_g00001.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353551 | 1e-69 | AK353551.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-52-B11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018489305.1 | 1e-151 | PREDICTED: trihelix transcription factor ASIL2-like | ||||
TrEMBL | A0A397ZGB4 | 1e-102 | A0A397ZGB4_BRACM; Uncharacterized protein | ||||
TrEMBL | M4F1C0 | 1e-102 | M4F1C0_BRARP; Uncharacterized protein | ||||
STRING | Bra034866.1-P | 1e-103 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4926 | 21 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11100.1 | 6e-79 | sequence-specific DNA binding transcription factors |