PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04588.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 338aa    MW: 37922.6 Da    PI: 5.7403
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04588.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.65.2e-09192237554
                              HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              h+ +Er RR++i +++  L++l+P +    ++   Ka +L + ++Y++sL
  Rsa1.0_04588.1_g00001.1 192 HSLAERARREKISKKMKYLQDLVPGC----NTITGKAGVLDEIINYVQSL 237
                              999***********************....9*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.50E-7185242No hitNo description
SuperFamilySSF474591.23E-15185255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.862187237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-16188256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-6192237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.5E-8193243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MLEGLVYPES LSLSYADMSV PERLKGMQQH QQIEVLSQSS NDSPELLQIL QFHGSNNDEL  60
LQSTFSHFQM LESGFGTKYN MDFGPSHEAM DGCISRTSSC QIDPADTMGV MLKNSVESRA  120
ISLKNKRKSE VKTREEEKTD KKIKVEAETE SNINNKEASS DTSKETSKGD SEIQKLDYIH  180
VRARRGQATD RHSLAERARR EKISKKMKYL QDLVPGCNTI TGKAGVLDEI INYVQSLKRQ  240
VEFLSMKLAV LNPELELAVE DLSVNQFQAY FTNFPVVIAS KPSVMVDLPL FPLDQQGSLD  300
LSVINPNQTS IDAVKFXVST RPARISRSIS DKSEPNIY
Functional Description ? help Back to Top
Source Description
UniProtAtypical bHLH transcription factor that acts as positive regulator of cell elongation downstream of multiple external and endogenous signals by direct binding to the promoters and activation of the two expansin genes EXPA1 and EXPA8, encoding cell wall loosening enzymes. Transcriptional activity is inhibited when binding to the bHLH transcription factor IBH1. {ECO:0000269|PubMed:23221598}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_04588.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018457344.10.0PREDICTED: transcription factor HBI1-like isoform X1
SwissprotQ9ZPW31e-167HBI1_ARATH; Transcription factor HBI1
TrEMBLA0A078GYI00.0A0A078GYI0_BRANA; BnaA09g09600D protein
STRINGBra037226.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34062363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18300.21e-169bHLH family protein