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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_04552.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 182aa MW: 20420.3 Da PI: 9.4233 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 95.6 | 4e-30 | 3 | 58 | 4 | 58 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 + Y+eClkN+A+s Gg+a+DGCgEfmp++++ +++ +l C ACgCHRnFHRr+++ Rsa1.0_04552.1_g00002.1 3 FLYNECLKNQAVSFGGYALDGCGEFMPKSTTIlTDPPSLSCDACGCHRNFHRRDHS 58 68**************************99999********************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 1.0E-24 | 1 | 68 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 8.3E-25 | 4 | 57 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 23.816 | 5 | 56 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.9E-29 | 5 | 56 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-21 | 103 | 165 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.56E-13 | 105 | 165 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.3E-26 | 108 | 165 | IPR006455 | Homeodomain, ZF-HD class |
PROSITE pattern | PS00365 | 0 | 135 | 151 | IPR006066 | Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0055114 | Biological Process | oxidation-reduction process | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0016491 | Molecular Function | oxidoreductase activity | ||||
GO:0020037 | Molecular Function | heme binding | ||||
GO:0051536 | Molecular Function | iron-sulfur cluster binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MVFLYNECLK NQAVSFGGYA LDGCGEFMPK STTILTDPPS LSCDACGCHR NFHRRDHSNV 60 VSHCTTSPLQ PAASTQHLLL SLSSSGFSAG PSDQDKGKIM VDRELVTKRR KRTKFTVKQK 120 VMMRGFAERA GWKINGCDDE CVRKFCSDVG VEREALKVWI HNNKYFANGR NRNTTSSMFQ 180 KL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 2e-17 | 108 | 165 | 17 | 74 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_04552.1_g00002.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB011483 | 7e-46 | AB011483.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUF9. | |||
GenBank | CP002688 | 7e-46 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018473087.1 | 1e-136 | PREDICTED: zinc-finger homeodomain protein 12 | ||||
Swissprot | Q9FKJ9 | 3e-84 | ZHD12_ARATH; Zinc-finger homeodomain protein 12 | ||||
TrEMBL | A0A397ZUP0 | 1e-106 | A0A397ZUP0_BRACM; Uncharacterized protein | ||||
TrEMBL | M4CR16 | 1e-106 | M4CR16_BRARP; Uncharacterized protein | ||||
STRING | Bra006657.1-P | 1e-107 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5166 | 25 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60480.1 | 3e-71 | homeobox protein 26 |