PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04519.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 177aa    MW: 20598.8 Da    PI: 10.0666
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04519.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.60.000251946330
                             HHHHHHHHHHHHHHHHHHHHHHCTSCCC CS
                      HLH  3 rahnerErrRRdriNsafeeLrellPka 30
                             +  n rE+ RR r+++ f+ L +++ + 
  Rsa1.0_04519.1_g00001.1 19 EQRNLREKERRMRMKHLFFMLSSHVSPT 46
                             5679*******************99774 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.6741665IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-101683IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-61884IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MRRQRGREIG EGSSMSWKEQ RNLREKERRM RMKHLFFMLS SHVSPTHRLS VPQLIDHSAS  60
YMIQLKEKVN NLREKKQTLL GEVENHSEGS TSFNLPKLSI YSQGSIIKMN LIMDLNIKRV  120
MLHELVSVFE EEGAQVMSAN LQNLNDSITY TITAQAIICR IGIDPSRIEE RLRDIIF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12227LREKER
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_04519.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0509593e-60AY050959.1 Arabidopsis thaliana unknown protein (At1g10585) mRNA, complete cds.
GenBankBT0154033e-60BT015403.1 Arabidopsis thaliana At1g10585 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018487210.11e-128PREDICTED: uncharacterized protein LOC108857688 isoform X2
SwissprotQ9XIJ15e-89BH168_ARATH; Transcription factor bHLH168
TrEMBLA0A3P5YCK21e-115A0A3P5YCK2_BRACM; Uncharacterized protein
STRINGBo5g012060.11e-111(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23822167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10586.12e-91bHLH family protein