 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Rsa1.0_04489.1_g00003.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
HSF |
| Protein Properties |
Length: 135aa MW: 15461.1 Da PI: 10.8164 |
| Description |
HSF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Rsa1.0_04489.1_g00003.1 | genome | RGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HSF_DNA-bind | 38.2 | 3.7e-12 | 7 | 101 | 1 | 97 |
HHHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHH....HSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEE CS
HSF_DNA-bind 1 aFlkklyeiledeelkelisws.engnsfvvldeeefakkvLpk....yFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweF 81
+F +ly+i++d++ + +isws ++ n fvv+d +++ +++L k + +n + F+ L gF++v + ++ eF
Rsa1.0_04489.1_g00003.1 7 TFYVQLYNIVDDPSSDPIISWSkSSPNGFVVWDLKTLRRDILMKsssgVLLGRNSTEFISNLRSHGFRSVLKGFGE-------LEF 85
5899******************6666****************88666678899*********************99.......*** PP
EESXXXXXXXXXXXXX CS
HSF_DNA-bind 82 khksFkkgkkelleki 97
+h F++g ++ +k+
Rsa1.0_04489.1_g00003.1 86 EHVDFTRGFVTKKKKM 101
****999876655554 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 135 aa
Download sequence Send
to blast |
MIRKLSTFYV QLYNIVDDPS SDPIISWSKS SPNGFVVWDL KTLRRDILMK SSSGVLLGRN 60
STEFISNLRS HGFRSVLKGF GELEFEHVDF TRGFVTKKKK MVKALSERFD AQIKAIKCRF 120
KAKNLKVDLI ISSPK
|
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT1G77570.1 | 2e-11 | Winged helix-turn-helix transcription repressor DNA-binding |
