PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04478.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 247aa    MW: 28675.1 Da    PI: 5.4459
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04478.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_139.41.3e-12138185552
                              CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 
                              ++ +r+++NRe+ArrsR RK+  i++L++ v +L+ eN++L ++l   
  Rsa1.0_04478.1_g00004.1 138 RKRKRMESNRESARRSRMRKQSHIDNLRNQVNQLDLENRELGNRLRLV 185
                              67899**********************************999666544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1705.1E-11128183No hitNo description
SMARTSM003385.3E-15134198IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.818136199IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.14E-11138186No hitNo description
PfamPF001705.6E-10138183IPR004827Basic-leucine zipper domain
CDDcd147021.06E-18139185No hitNo description
PROSITE patternPS000360141156IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MLSTVPAFSF LEPGTVNQFS GFQTGFTPWE WDCFDLFSVN QLSIEPAVPS PCYGESNSGL  60
VRTNSGFDDK TGSDESCAGF TKPSFDDTVS SQCLLLCTQG EKPDPDDPEQ LTAIAKPDSG  120
EQNHNRNKLI NPEMTDERKR KRMESNRESA RRSRMRKQSH IDNLRNQVNQ LDLENRELGN  180
RLRLVIYHLQ QVNTDNNRLV TEQEMLRLRF SEMRRILILR QLQQQQQQWE LNNRRMIMYE  240
QNPSTII
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150157RRSRMRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_04478.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018453535.10.0PREDICTED: light-inducible protein CPRF2-like
TrEMBLA0A398AI541e-143A0A398AI54_BRACM; Uncharacterized protein
TrEMBLM4D5M31e-143M4D5M3_BRARP; Uncharacterized protein
STRINGBra011780.1-P1e-144(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78551840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37730.11e-105basic leucine-zipper 7