PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_04478.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bZIP | ||||||||
Protein Properties | Length: 247aa MW: 28675.1 Da PI: 5.4459 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 39.4 | 1.3e-12 | 138 | 185 | 5 | 52 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 ++ +r+++NRe+ArrsR RK+ i++L++ v +L+ eN++L ++l Rsa1.0_04478.1_g00004.1 138 RKRKRMESNRESARRSRMRKQSHIDNLRNQVNQLDLENRELGNRLRLV 185 67899**********************************999666544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 5.1E-11 | 128 | 183 | No hit | No description |
SMART | SM00338 | 5.3E-15 | 134 | 198 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.818 | 136 | 199 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 9.14E-11 | 138 | 186 | No hit | No description |
Pfam | PF00170 | 5.6E-10 | 138 | 183 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14702 | 1.06E-18 | 139 | 185 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 141 | 156 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MLSTVPAFSF LEPGTVNQFS GFQTGFTPWE WDCFDLFSVN QLSIEPAVPS PCYGESNSGL 60 VRTNSGFDDK TGSDESCAGF TKPSFDDTVS SQCLLLCTQG EKPDPDDPEQ LTAIAKPDSG 120 EQNHNRNKLI NPEMTDERKR KRMESNRESA RRSRMRKQSH IDNLRNQVNQ LDLENRELGN 180 RLRLVIYHLQ QVNTDNNRLV TEQEMLRLRF SEMRRILILR QLQQQQQQWE LNNRRMIMYE 240 QNPSTII |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 150 | 157 | RRSRMRKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_04478.1_g00004.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018453535.1 | 0.0 | PREDICTED: light-inducible protein CPRF2-like | ||||
TrEMBL | A0A398AI54 | 1e-143 | A0A398AI54_BRACM; Uncharacterized protein | ||||
TrEMBL | M4D5M3 | 1e-143 | M4D5M3_BRARP; Uncharacterized protein | ||||
STRING | Bra011780.1-P | 1e-144 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7855 | 18 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37730.1 | 1e-105 | basic leucine-zipper 7 |