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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_04448.1_g00004.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
NAC |
Protein Properties |
Length: 287aa MW: 32573.8 Da PI: 5.0309 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_04448.1_g00004.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 123.4 | 2e-38 | 6 | 136 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86
+GfrF Ptd el++++Lk+k++gk+ +++ i+ev + +eP +Lp+ ++k+++ wyf s+++ ++++++ ++r+t sg+Wk t
Rsa1.0_04448.1_g00004.1 6 VGFRFCPTDVELINYFLKNKIQGKSWLVDDKIREVSTCGHEPASLPAlsMIKTKDPVWYFISPKEYTSPKKNVTKRTTPSGFWKVT 91
7************************999999***************4458888999****************************** PP
NAM 87 gkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
g+d++v+++ +g ++g+kktLv+++g+++++ +t W+mhey++
Rsa1.0_04448.1_g00004.1 92 GNDRKVKEEkrrNGVVIGIKKTLVYHEGNSSNAARTPWTMHEYHI 136
*******986667777***************************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 287 aa
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to blast |
MATSLVGFRF CPTDVELINY FLKNKIQGKS WLVDDKIREV STCGHEPASL PALSMIKTKD 60 PVWYFISPKE YTSPKKNVTK RTTPSGFWKV TGNDRKVKEE KRRNGVVIGI KKTLVYHEGN 120 SSNAARTPWT MHEYHITCLP YVNQSYVICK IFYKGNVEDI PSCSNSSEPS QYLLINDSNT 180 VRATNKPPQV EQAGQESLSG FSANDVIMLM NEQEDLCPWD ALCPIPNTLF IDNNYNTNVQ 240 LQAPCLAQDD DENLGAFTQI EYLCTDHQEF ITQENSEEYM INGLCLL
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 9e-21 | 7 | 154 | 20 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-21 | 7 | 154 | 20 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-21 | 7 | 154 | 20 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-21 | 7 | 154 | 20 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 9e-21 | 7 | 154 | 23 | 168 | NAC domain-containing protein 19 |
3swm_B | 9e-21 | 7 | 154 | 23 | 168 | NAC domain-containing protein 19 |
3swm_C | 9e-21 | 7 | 154 | 23 | 168 | NAC domain-containing protein 19 |
3swm_D | 9e-21 | 7 | 154 | 23 | 168 | NAC domain-containing protein 19 |
3swp_A | 9e-21 | 7 | 154 | 23 | 168 | NAC domain-containing protein 19 |
3swp_B | 9e-21 | 7 | 154 | 23 | 168 | NAC domain-containing protein 19 |
3swp_C | 9e-21 | 7 | 154 | 23 | 168 | NAC domain-containing protein 19 |
3swp_D | 9e-21 | 7 | 154 | 23 | 168 | NAC domain-containing protein 19 |
4dul_A | 9e-21 | 7 | 154 | 20 | 165 | NAC domain-containing protein 19 |
4dul_B | 9e-21 | 7 | 154 | 20 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcription activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Involved in salt stress response during seed germination and seedling growth. Binds the auxin-responsive IAA30 gene promoter and may serve as a molecular link that interconnects a developmental feedback loop of auxin signaling with a salt signal transduction pathway during seed germination (PubMed:21450938). {ECO:0000269|PubMed:21450938}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By salt stress and abscisic acid (ABA) in roots. {ECO:0000269|PubMed:21450938}. |