PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04285.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Trihelix
Protein Properties Length: 524aa    MW: 59587 Da    PI: 7.3459
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04285.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix37.27.5e-121483887
                 trihelix 38 mrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
                             m+e g+ r++k+Ckek+en+ k++k++keg+ ++++++  t+++fdqlea
  Rsa1.0_04285.1_g00001.1  1 MAELGYVRNAKKCKEKFENVYKYHKRTKEGRTGKSEGK--TYRFFDQLEA 48
                             7899****************************975544..6*******85 PP
2trihelix104.57.6e-33320405187
                 trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                              rW+k e+ aLi++r++++++++++  k+plWee+s+ m++ gf+r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+
  Rsa1.0_04285.1_g00001.1 320 RWPKVEIEALIKLRTNLDSKYQENGPKGPLWEEISAGMKRLGFNRNSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLD 404
                              8*********************************************************************8.99***********8 PP

                 trihelix  87 a 87 
                              a
  Rsa1.0_04285.1_g00001.1 405 A 405
                              5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.5E-7149No hitNo description
PROSITE profilePS500907.155313377IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.1E-4317376IPR009057Homeodomain-like
SMARTSM007170.0023317379IPR001005SANT/Myb domain
PfamPF138373.3E-22319406No hitNo description
CDDcd122035.96E-27320384No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MAELGYVRNA KKCKEKFENV YKYHKRTKEG RTGKSEGKTY RFFDQLEALE TRPTSSSLHH  60
QQQQQQQPPQ TQPQPQPPLR PHNNNNNSSM FSTPPPVTTI MPPITNTTVL PYTQPVNVPS  120
FPNISGDFLS DNSTSSSHST SSDVEIGDGT TTTRKKKRNR KWKEFFERLT RQVVDKQEEL  180
QRKFLEAVEK REHERMVREE SWRVQEITRI NRERDILAQE RSMSAAKDAA VMAFLQKLSE  240
KPNPQGHSVP QPQPQPQPPP SQMQVNNNNN QQTPQPRPPP PTTQPTQPVT PTIDTAKTDN  300
GDQNMTPVSA SAAGAVSSSR WPKVEIEALI KLRTNLDSKY QENGPKGPLW EEISAGMKRL  360
GFNRNSKRCK EKWENINKYF KKVKESNKKR PEDSKTCPYF HQLDALYRER NKFHTNNNVV  420
ASSSSTSGLV KPDNSVPLMV QPEQQWPPAM ASTTMTSTVA ATAQPGQHPP PPPQPLDQNF  480
DDEEGTDGEE YDDEEDYEEN EEEEGGEFEL VPSNNNNNKP TNNM
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_04285.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892030.0AC189203.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB006H21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018446335.10.0PREDICTED: trihelix transcription factor GT-2
TrEMBLA0A0D3CWA40.0A0A0D3CWA4_BRAOL; Uncharacterized protein
TrEMBLA0A3P6GTS20.0A0A3P6GTS2_BRAOL; Uncharacterized protein
STRINGBo6g083690.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48492553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-134Trihelix family protein