PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04266.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 320aa    MW: 34739.1 Da    PI: 10.3198
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04266.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.58.9e-31244301359
                              -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                              D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+a+d +++++tYe +Hnh+
  Rsa1.0_04266.1_g00002.1 244 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERAADDSSMLIVTYEADHNHS 301
                              99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105334.0E-15194240IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.8E-32231301IPR003657WRKY domain
PROSITE profilePS5081130.354237303IPR003657WRKY domain
SuperFamilySSF1182904.84E-26240302IPR003657WRKY domain
SMARTSM007746.3E-36242302IPR003657WRKY domain
PfamPF031062.3E-26244300IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MAVELMTRNY ISGVGVDSFA VQEAAASGLK SMENFIGLMS HESFNSNQPS SSSSSAAITD  60
LELARNTTAD AAVSKFKRVI SLLDRTRTGH ARFRRAPVIS PIQEIKPTPF QPPPPIRKGS  120
FSSPFKTIDF SSLSSLTTES EHMKHHHRPS ETAPLGTQSL STTVSSHHHR PSETAPFGTQ  180
SLSTTVSSFS KSAKRKCNSE NHITGKCASA SSGRCHCSKK RKTKQRRVIR VPAISAKMSD  240
VPPDDYSWRK YGQKPIKGSP HPRGYYKCSS VRGCPARKHV ERAADDSSML IVTYEADHNH  300
SLSAADLAGA AVADLILESS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21230302273WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00275DAPTransfer from AT2G23320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_04266.1_g00002.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300360.0KF430036.1 Brassica rapa WRKY transcription factor 15 (WRKY15) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018477660.10.0PREDICTED: probable WRKY transcription factor 15
SwissprotO221761e-168WRK15_ARATH; Probable WRKY transcription factor 15
TrEMBLM4ETP20.0M4ETP2_BRARP; Uncharacterized protein
STRINGBra032174.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17152887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23320.11e-135WRKY DNA-binding protein 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Van Aken O, et al.
    Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases.
    Plant Physiol., 2016. 171(3): p. 2150-65
    [PMID:27208304]
  3. Liu F, et al.
    Interactions of WRKY15 and WRKY33 transcription factors and their roles in the resistance of oilseed rape to Sclerotinia infection.
    Plant Biotechnol. J., 2018. 16(4): p. 911-925
    [PMID:28929638]