PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04243.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 162aa    MW: 18517.1 Da    PI: 6.5465
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04243.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.51.3e-0953100455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +h+ +Er RR++iN+++  L++l+P +     k +  a +Le  ++Y++sLq
  Rsa1.0_04243.1_g00004.1  53 SHSLAERVRREKINERLKCLQDLVPGC----YKTMGMAVMLEVIIDYVRSLQ 100
                              8*************************9....355999*************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.77E-1147104No hitNo description
SuperFamilySSF474595.5E-1747116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.2E-1749111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.6124999IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-753100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.8E-955105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:2000488Biological Processpositive regulation of brassinosteroid biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MAGDLGRKSK KKESGSKRKR KRLEEEESIN EDDIEKPRDV VHVRAKRGQA TDSHSLAERV  60
RREKINERLK CLQDLVPGCY KTMGMAVMLE VIIDYVRSLQ NQIEFLSMKL SAASAYYDLN  120
SLDIEPTDIF QGGNMYRAEE MESIIRESVG TQPPDFSSTL PF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1622RKSKKKESGSKRKRKRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_04243.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1757571e-165AK175757.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH075), complete cds, clone: RAFL22-31-M12.
GenBankAY0888851e-165AY088885.1 Arabidopsis thaliana clone 98716 mRNA, complete sequence.
GenBankDQ4462891e-165DQ446289.1 Arabidopsis thaliana clone pENTR221-At1g25330 basic helix-loop-helix family protein (At1g25330) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018449998.11e-116PREDICTED: transcription factor bHLH75 isoform X1
SwissprotA4D9984e-89BH075_ARATH; Transcription factor bHLH75
TrEMBLA0A0D3BI541e-108A0A0D3BI54_BRAOL; Uncharacterized protein
TrEMBLA0A3N6R1I81e-108A0A3N6R1I8_BRACR; Uncharacterized protein
STRINGBo3g138670.11e-108(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM140812024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25330.11e-84bHLH family protein
Publications ? help Back to Top
  1. Khan M, et al.
    Interplay between phosphorylation and SUMOylation events determines CESTA protein fate in brassinosteroid signalling.
    Nat Commun, 2014. 5: p. 4687
    [PMID:25134617]
  2. Eremina M, et al.
    Brassinosteroids participate in the control of basal and acquired freezing tolerance of plants.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(40): p. E5982-E5991
    [PMID:27655893]
  3. Pfannebecker KC,Lange M,Rupp O,Becker A
    Seed Plant-Specific Gene Lineages Involved in Carpel Development.
    Mol. Biol. Evol., 2017. 34(4): p. 925-942
    [PMID:28087776]