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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_04243.1_g00003.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
CO-like |
Protein Properties |
Length: 370aa MW: 41063 Da PI: 6.7711 |
Description |
CO-like family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_04243.1_g00003.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-B_box | 32.2 | 2.3e-10 | 13 | 56 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
+r C+++++k++++fC ++ +lC++C ++ H+ H++v
Rsa1.0_04243.1_g00003.1 13 ARACDNCSKKQAHWFCAADDAFLCQSCDTSVHSAnalarrHDRV 56
578*****************************657788888876 PP
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2 | CCT | 66.1 | 9.7e-23 | 317 | 360 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44
Rea+++RY+eKr++R+F KkirYe+RK++Ae RpR+KGrFvk++
Rsa1.0_04243.1_g00003.1 317 REASVSRYREKRRKRLFTKKIRYEVRKQYAEIRPRMKGRFVKRS 360
9*****************************************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 370 aa
Download sequence Send
to blast |
MKSLANAVRA KTARACDNCS KKQAHWFCAA DDAFLCQSCD TSVHSANALA RRHDRVRLKN 60 STSPLQEAAT WHQWFTRKPR TPRGSGGKRN NNSPTFHGLV PEISAEDQTD SSDVEEQLMI 120 CQVPVVDPTV VEPKIKVPMM RSDDQEVDKD NAESCLNGFL PTDMELEDFA ADVETLLGRG 180 LDTEYYTMEE LGLSNTEMFK VKKDNDRDGT TMPFDLNFGF YSQNTYEEDA IKNVESSGEC 240 VEVKEEEQKN VLMLNLDYDL VISTWGGQGL PWTSGGPPDI GITGSPAVSM VGNGGGSHKK 300 RNVGGCLPSS GVGDGGREAS VSRYREKRRK RLFTKKIRYE VRKQYAEIRP RMKGRFVKRS 360 SLAVSAGNSP
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 328 | 343 | RKRLFTKKIRYEVRKQ |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT1G25440.1 | 1e-174 | B-box type zinc finger protein with CCT domain |