PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04219.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 300aa    MW: 33600.4 Da    PI: 8.2305
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04219.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.000433961123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             y C+ C + F++   L  H+++H
  Rsa1.0_04219.1_g00003.1 39 YACSFCRREFRSAQALGGHMNVH 61
                             89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.53E-63665No hitNo description
PROSITE profilePS5015711.1773966IPR007087Zinc finger, C2H2
PfamPF139122.3E-53962IPR007087Zinc finger, C2H2
PROSITE patternPS0002804161IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MEKPGGFFTP KKSNKESSWE ELAFAEDDAA GSLWPPRSYA CSFCRREFRS AQALGGHMNV  60
HRRDRARLKQ SDDQYLFSKS SSSPEHPSHK NSETSCYTLV FNSTPNRFKS EHSHVIDLPS  120
SPSSLLYLPP SRASSGLPQK KDTSFSSPFA IEPSNNSENI LSSSPWPFPD TFVKKNRCDL  180
YETPVIDGSK KRKTERDVPK NGDTANVNLG NTTDLSLRLN LVIHEGYPII AEVSDEEIGR  240
GGSLRRRRMH ESSSQPSIFV SSISCKSAII TRKEEIKHKV DHFEDLDLEL RLGADPPKGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-123461229superman protein
2l1o_A1e-123461229Transcriptional regulator SUPERMAN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may regulate cell division and growth. {ECO:0000269|PubMed:12154136}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_04219.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893070.0AC189307.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB033O04, complete sequence.
GenBankAC1895100.0AC189510.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB089D07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018459362.10.0PREDICTED: uncharacterized protein LOC108830256
SwissprotO809421e-142ZFP10_ARATH; Zinc finger protein 10
TrEMBLA0A078IW730.0A0A078IW73_BRANA; BnaA04g29160D protein
TrEMBLA0A397ZS450.0A0A397ZS45_BRACM; Uncharacterized protein
TrEMBLM4DKX70.0M4DKX7_BRARP; Uncharacterized protein
STRINGBra017158.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM110472534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.11e-118zinc-finger protein 10