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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_04209.1_g00004.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
WRKY |
Protein Properties |
Length: 460aa MW: 50318.6 Da PI: 8.8688 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_04209.1_g00004.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 100.3 | 1.2e-31 | 200 | 257 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60
dDgynWrKYGqK++kg e+prsYY+Ct+ +Cpvkkkvers+ d+++++i+Y+g+H+hek
Rsa1.0_04209.1_g00004.1 200 DDGYNWRKYGQKPIKGCEYPRSYYKCTQVNCPVKKKVERSS-DGQITQIIYKGQHDHEK 257
8****************************************.***************85 PP
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2 | WRKY | 104.2 | 7.2e-33 | 343 | 401 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
ldDgy+WrKYGqK+vkg+++prsYY+Ct+++C+v+k+ver+++d k+v++tYeg+Hnh+
Rsa1.0_04209.1_g00004.1 343 LDDGYRWRKYGQKVVKGNPHPRSYYKCTTSNCTVRKHVERASTDVKAVITTYEGKHNHD 401
59********************************************************7 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0031347 | Biological Process | regulation of defense response |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 460 aa
Download sequence Send
to blast |
MALEDDVTSM RTTTLVAPTR PTITVPHRPP AIETAAYLFG GGDGLSLSPG PLSFVSSLFV 60 DSFPDVLTPD TQRTASFSQL LAGAISVSPG GGGGRSTAGM FAGGSTMFTI PSGLSPSSLL 120 TSPMFFPPQQ SPRQTSLVQP QRPDSFPNQM PPSTSTAVHD RQCFEVSQAD HRARNHYSNL 180 ANNNNNNRSY NVVNVDKPAD DGYNWRKYGQ KPIKGCEYPR SYYKCTQVNC PVKKKVERSS 240 DGQITQIIYK GQHDHEKPQN RRGGAGGARN SGEIGDIHYI GGSGQMMESS DDSGYGKDHN 300 NDTDDDDLPE SKIRKTDGGV STTHRSVTEP KIVVQTRSEV DLLDDGYRWR KYGQKVVKGN 360 PHPRSYYKCT TSNCTVRKHV ERASTDVKAV ITTYEGKHNH DVPAPRNGTA AATSKTAGTS 420 DHHRMTSMSG NMQQHMRFAN TNNTGQSPVL LRLKEEENNY
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KM593138 | 0.0 | KM593138.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY28) mRNA, complete cds. |