PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04209.1_g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 460aa    MW: 50318.6 Da    PI: 8.8688
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04209.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.31.2e-31200257260
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                              dDgynWrKYGqK++kg e+prsYY+Ct+ +Cpvkkkvers+ d+++++i+Y+g+H+hek
  Rsa1.0_04209.1_g00004.1 200 DDGYNWRKYGQKPIKGCEYPRSYYKCTQVNCPVKKKVERSS-DGQITQIIYKGQHDHEK 257
                              8****************************************.***************85 PP

2WRKY104.27.2e-33343401159
                              ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              ldDgy+WrKYGqK+vkg+++prsYY+Ct+++C+v+k+ver+++d k+v++tYeg+Hnh+
  Rsa1.0_04209.1_g00004.1 343 LDDGYRWRKYGQKVVKGNPHPRSYYKCTTSNCTVRKHVERASTDVKAVITTYEGKHNHD 401
                              59********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-28190259IPR003657WRKY domain
SuperFamilySSF1182904.45E-25197258IPR003657WRKY domain
SMARTSM007741.5E-34199257IPR003657WRKY domain
PfamPF031062.7E-24200255IPR003657WRKY domain
PROSITE profilePS5081124.191200258IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.0E-36328403IPR003657WRKY domain
SuperFamilySSF1182906.67E-29335403IPR003657WRKY domain
PROSITE profilePS5081137.619338403IPR003657WRKY domain
SMARTSM007743.0E-37343402IPR003657WRKY domain
PfamPF031063.3E-25344401IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0031347Biological Processregulation of defense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MALEDDVTSM RTTTLVAPTR PTITVPHRPP AIETAAYLFG GGDGLSLSPG PLSFVSSLFV  60
DSFPDVLTPD TQRTASFSQL LAGAISVSPG GGGGRSTAGM FAGGSTMFTI PSGLSPSSLL  120
TSPMFFPPQQ SPRQTSLVQP QRPDSFPNQM PPSTSTAVHD RQCFEVSQAD HRARNHYSNL  180
ANNNNNNRSY NVVNVDKPAD DGYNWRKYGQ KPIKGCEYPR SYYKCTQVNC PVKKKVERSS  240
DGQITQIIYK GQHDHEKPQN RRGGAGGARN SGEIGDIHYI GGSGQMMESS DDSGYGKDHN  300
NDTDDDDLPE SKIRKTDGGV STTHRSVTEP KIVVQTRSEV DLLDDGYRWR KYGQKVVKGN  360
PHPRSYYKCT TSNCTVRKHV ERASTDVKAV ITTYEGKHNH DVPAPRNGTA AATSKTAGTS  420
DHHRMTSMSG NMQQHMRFAN TNNTGQSPVL LRLKEEENNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-38200404878Probable WRKY transcription factor 4
2lex_A4e-38200404878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_04209.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5931380.0KM593138.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY28) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018485962.10.0PREDICTED: probable WRKY transcription factor 58 isoform X1
SwissprotQ93WU70.0WRK58_ARATH; Probable WRKY transcription factor 58
TrEMBLA0A0D3B9B70.0A0A0D3B9B7_BRAOL; Uncharacterized protein
STRINGBo3g055330.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM156701416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01080.11e-166WRKY DNA-binding protein 58
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]