PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rsa1.0_04195.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 81aa MW: 9317.78 Da PI: 10.5131 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 103.2 | 9e-33 | 22 | 72 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+ Rsa1.0_04195.1_g00003.1 22 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 72 79***********************************************95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 8.1E-41 | 14 | 73 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.179 | 14 | 74 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.05E-30 | 15 | 74 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.40E-40 | 15 | 75 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 16 | 70 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.0E-34 | 16 | 36 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.7E-28 | 23 | 70 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.0E-34 | 36 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.0E-34 | 51 | 72 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 81 aa Download sequence Send to blast |
MELGGDSSPR RKTAGRGKIE IKRIENTTNR QVTFCKRRNG LLKKAYELSV LCDAEVALIV 60 FSSRGRLYEY SNNRFLLMPY S |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 8e-21 | 15 | 81 | 2 | 70 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 8e-21 | 15 | 81 | 2 | 70 | Myocyte-specific enhancer factor 2B |
1tqe_R | 8e-21 | 15 | 81 | 2 | 70 | Myocyte-specific enhancer factor 2B |
1tqe_S | 8e-21 | 15 | 81 | 2 | 70 | Myocyte-specific enhancer factor 2B |
6c9l_A | 8e-21 | 15 | 81 | 2 | 70 | Myocyte-specific enhancer factor 2B |
6c9l_B | 8e-21 | 15 | 81 | 2 | 70 | Myocyte-specific enhancer factor 2B |
6c9l_C | 8e-21 | 15 | 81 | 2 | 70 | Myocyte-specific enhancer factor 2B |
6c9l_D | 8e-21 | 15 | 81 | 2 | 70 | Myocyte-specific enhancer factor 2B |
6c9l_E | 8e-21 | 15 | 81 | 2 | 70 | Myocyte-specific enhancer factor 2B |
6c9l_F | 8e-21 | 15 | 81 | 2 | 70 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Rsa1.0_04195.1_g00003.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC232508 | 1e-91 | AC232508.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB060L22, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018450192.1 | 5e-45 | PREDICTED: floral homeotic protein AGAMOUS-like isoform X1 | ||||
Refseq | XP_018450193.1 | 5e-45 | PREDICTED: floral homeotic protein AGAMOUS-like isoform X2 | ||||
Refseq | XP_018450194.1 | 5e-45 | PREDICTED: floral homeotic protein AGAMOUS-like isoform X3 | ||||
Refseq | XP_018450196.1 | 5e-45 | PREDICTED: floral homeotic protein AGAMOUS-like isoform X4 | ||||
Refseq | XP_018450197.1 | 5e-45 | PREDICTED: floral homeotic protein AGAMOUS-like isoform X5 | ||||
Refseq | XP_018450198.1 | 4e-45 | PREDICTED: floral homeotic protein AGAMOUS-like isoform X6 | ||||
Swissprot | Q01540 | 5e-43 | AG_BRANA; Floral homeotic protein AGAMOUS | ||||
TrEMBL | A0A0D3BKE5 | 3e-50 | A0A0D3BKE5_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g157470.1 | 5e-51 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM78 | 28 | 413 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G18960.1 | 3e-44 | MIKC_MADS family protein |