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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_04142.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB_related | ||||||||
Protein Properties | Length: 323aa MW: 35797.7 Da PI: 7.732 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37 | 8e-12 | 40 | 80 | 1 | 42 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcks 42 r +W++eE+e+++da++++G W+ I +++g R++ ++ks Rsa1.0_04142.1_g00001.1 40 REKWSEEEHERFLDAIQLYGRS-WRQIQEHIGIFRSEAMLKS 80 789*****************55.*********7788888887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.86E-8 | 29 | 70 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.244 | 35 | 85 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 1.1E-8 | 38 | 71 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 7.0E-5 | 39 | 88 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.5E-10 | 40 | 80 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.3E-8 | 40 | 80 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.40E-6 | 42 | 81 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MAAPDRSEDV SSNVENGSCN SNEGTNHAKV RKPYTVSKQR EKWSEEEHER FLDAIQLYGR 60 SWRQIQEHIG IFRSEAMLKS FSPRSCVARE ADIGSDGSIM IPPPRPKRKP THPYPRKSPV 120 PYSHSPSSAM EKETKSPTSV LSAFATEDEV NRCSSPNSCT SDIQSIDKKN DYAVSNQSFK 180 EDDAVTGSRP TSSIMLFGKI VLVAEESYKT SSSREGGADL KPMTGQDSRH VDTVLSLGVW 240 ETSCTGSNAY GSVTKVSENL EKSAEPVNSP WKRPTSSERP EPCYPINGFR PYKRCLSERE 300 VTSSLSLVAS EEEGSRRRAR VCS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in phytochrome A-mediated cotyledon opening. Controlled by the central oscillator mediated by LHY and CCA1. Part of a regulatory circadian feedback loop. Regulates its own expression. {ECO:0000269|PubMed:14523250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00146 | DAP | Transfer from AT1G18330 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_04142.1_g00001.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Up-regulated transiently by red light and far red light. {ECO:0000269|PubMed:14523250, ECO:0000269|PubMed:19805390}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB115696 | 2e-32 | AB115696.1 Arabidopsis thaliana EPR1 mRNA for MYB-related transcription factor EPR1, complete cds. | |||
GenBank | AY063952 | 2e-32 | AY063952.1 Arabidopsis thaliana unknown protein (At1g18330) mRNA, complete cds. | |||
GenBank | AY114070 | 2e-32 | AY114070.1 Arabidopsis thaliana unknown protein (At1g18330) mRNA, complete cds. | |||
GenBank | AY550299 | 2e-32 | AY550299.1 Arabidopsis thaliana MYB transcription factor (At1g18330) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018467719.1 | 0.0 | PREDICTED: protein REVEILLE 7 | ||||
Swissprot | B3H5A8 | 1e-137 | RVE7_ARATH; Protein REVEILLE 7 | ||||
TrEMBL | A0A3N6QIK3 | 1e-173 | A0A3N6QIK3_BRACR; Uncharacterized protein | ||||
STRING | Bra025914.1-P | 1e-169 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9174 | 27 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18330.1 | 1e-127 | MYB_related family protein |
Publications ? help Back to Top | |||
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