PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_04134.1_g00005.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 255aa MW: 28319.8 Da PI: 8.1187

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_04134.1_g00005.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.1	6.4e-13	65	111	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h +E+rRRdriNs ++ Lr+l+P++ Kl+Ka+ L ++e +k+L Rsa1.0_04134.1_g00005.1 65 RSHRLAEKRRRDRINSHLSALRKLVPNS-----DKLDKAALLATVIEQVKEL 111 68***********************8.....7***********99988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.046	62	111	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.7E-13	64	117	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.08E-12	65	113	No hit	No description
Gene3D	G3DSA:4.10.280.10	7.8E-14	65	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-10	65	111	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.8E-11	68	117	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	6.61E-4	146	221	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MENSYESAVK WSDSNSPYNM LSCSLLQSDS DLSRFNLGFS SSSSSGNFQA DEFVGGIEKG 60 ELVSRSHRLA EKRRRDRINS HLSALRKLVP NSDKLDKAAL LATVIEQVKE LKQTATQSPT 120 FQDLPTEADE VIVQPETISN DFEPDTIIFK ASFCCEDQPE AISEIIRVLT KFQLETLQAE 180 IICVGGRMRI NFVLKDSNRK GTTTSMAASA KSLKQALCAA LNRIASSSSS SSTSSVCRIR 240 SKRQRWFLSS HYSQQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_04134.1_g00005.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by salicylic acid (SA) treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC232572	1e-167	AC232572.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS005G02, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018477937.1	0.0	PREDICTED: transcription factor bHLH51-like
Swissprot	Q9XEF0	1e-133	BH051_ARATH; Transcription factor bHLH51
TrEMBL	A0A0D3C5C3	1e-159	A0A0D3C5C3_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6D8M5	1e-159	A0A3P6D8M5_BRAOL; Uncharacterized protein
STRING	Bo4g188890.1	1e-160	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6806	25	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40200.1	1e-126	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]