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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_04126.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | C2H2 | ||||||||
Protein Properties | Length: 241aa MW: 26003.6 Da PI: 7.8408 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.1 | 6.6e-05 | 97 | 119 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ CgksF++ L H +H Rsa1.0_04126.1_g00002.1 97 FKCTVCGKSFTSYQALGGHKTSH 119 89**********99998888777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.42E-9 | 96 | 119 | No hit | No description |
PROSITE profile | PS50157 | 11.074 | 97 | 124 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.5E-13 | 97 | 121 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0049 | 97 | 119 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.7E-4 | 97 | 119 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 99 | 119 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.42E-9 | 158 | 185 | No hit | No description |
PROSITE profile | PS50157 | 8.933 | 163 | 185 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 8.5E-12 | 163 | 187 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.48 | 163 | 185 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 165 | 185 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MALETLNSPS SATATARPLL RYREEMEPDH LEQWAKRKRT KRQRLDQNHH SQDQEPTPSE 60 EEYLALCLLM LARGTAVQPP LTPPPPPRRP SSDHRDFKCT VCGKSFTSYQ ALGGHKTSHR 120 KPPANNVDVP SSQEPSNNNG HSNVVFSGNG TASNGVSQSG KIHTCSICFK SFPSGQALGG 180 HKRCHYDGGN NGNGNGCSSN SVGVIGGSDV SDVDDERSSE RSAIRGFDLN LPADQVSVVI 240 S |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. {ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_04126.1_g00002.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA), ethylene, dehydration, salt and cold. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018488722.1 | 1e-180 | PREDICTED: zinc finger protein AZF1 | ||||
Swissprot | Q9SSW1 | 1e-103 | AZF1_ARATH; Zinc finger protein AZF1 | ||||
TrEMBL | A0A078FAA3 | 1e-135 | A0A078FAA3_BRANA; BnaA06g25060D protein | ||||
TrEMBL | A0A3P5YJ62 | 1e-135 | A0A3P5YJ62_BRACM; Uncharacterized protein | ||||
STRING | Bo3g096410.1 | 1e-132 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3121 | 22 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67450.1 | 2e-94 | zinc-finger protein 1 |
Publications ? help Back to Top | |||
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