PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04081.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family BES1
Protein Properties Length: 742aa    MW: 83015.7 Da    PI: 7.8247
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04081.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822146.13e-45642021134
                   DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssa 86 
                              ggs+r+++ +E+E++k+RER+RRai+a+i+ GLR++Gny+l++raD+n+V+ AL+reAGwvv +DGtt++  s+ ++ a +agss 
  Rsa1.0_04081.1_g00003.1  64 GGSRRSRPVEEKERTKLRERHRRAITARILGGLRRHGNYNLRVRADINDVISALAREAGWVVLPDGTTFPSKSQGTKPAVVAGSSG 149
                              689*******************************************************************5555554445555444 PP

                   DUF822  87 s...aspesslq.sslkssalaspves.ysaspksssfpspssldsislasaa 134
                              s    +++s+    +++ss l+sp+++  s+++k +    ps +d  +++ ++
  Rsa1.0_04081.1_g00003.1 150 ShmaPQQSSPPAlRVVSSSGLRSPTTElNSCRMKGVFAHTPSPYDLPQTQCSE 202
                              33225555555567788899***987615678999999999999988776543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056872.5E-3965206IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514451.39E-165238688IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.801.7E-181241701IPR013781Glycoside hydrolase, catalytic domain
PfamPF013736.8E-88247668IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.8E-60278292IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.8E-60299317IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.8E-60321342IPR001554Glycoside hydrolase, family 14
PROSITE patternPS005060325333IPR018238Glycoside hydrolase, family 14, conserved site
PRINTSPR007504.8E-60416438IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.8E-60489508IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.8E-60524540IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.8E-60541552IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.8E-60559582IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.8E-60599621IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 742 aa     Download sequence    Send to blast
MVTDMQKLLG ASEEDDEEEM DADVKEEDDG HRRRNRGAAS GSSNDEFMFQ QSSSMQDQQV  60
DTPGGSRRSR PVEEKERTKL RERHRRAITA RILGGLRRHG NYNLRVRADI NDVISALARE  120
AGWVVLPDGT TFPSKSQGTK PAVVAGSSGS HMAPQQSSPP ALRVVSSSGL RSPTTELNSC  180
RMKGVFAHTP SPYDLPQTQC SELVGSVNKA DGLVGCSVDV INSKQILEIP PNMTEQDFSG  240
TPYVPVYVML PLGVINMKCE LADRDGLLKH LRILKSIQVD GVKVDCWWGI AECHSPQEYN  300
WNGYRQLFQI VRDLNLKIQV LMCFHECGGN VGDDVCIPLP HXPFLLEIGR TNPDIYFTDR  360
EGRRNPECLS WGIDKERVLR GRTALEVYFD YMRSFRIELG EFVEEGVISV VEIGLGPCGE  420
LRYPSCPIKH GWRYPGVGEF QCYDKYLLKS LRRAAESRGH PFWGRAPENA GSYNSQPQGT  480
GFFCDGGDYD GLYGRFFLKW YSQVLIDHAD RVLSLAKLVF FDSTCIAAKL PDVHWWYRTA  540
SHAAELTAGF YNPSNRDGYA EIASTLKKHG ATLSFVSGEV QVLNRPDDFS GALGEPEAVA  600
WQVLNAVWDT DTPIARENSL PCHDRVGYNK VLESVKFPND PDRRHLSSFA YSRLVPALLE  660
GHNLVEFDRF VKKLHGEAVM DHHHHHQQDK KIKKLQANKN KMKVDGSGKK KKGGFSVGKK  720
KLKTKLTPAA KAKAAQAMQL DN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-13624367711444Beta-amylase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_04081.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018436598.10.0PREDICTED: beta-amylase 7 isoform X1
RefseqXP_018436599.10.0PREDICTED: beta-amylase 7 isoform X1
RefseqXP_018436600.10.0PREDICTED: beta-amylase 7 isoform X1
SwissprotO808310.0BAM7_ARATH; Beta-amylase 7
TrEMBLA0A0D3BQ770.0A0A0D3BQ77_BRAOL; Beta-amylase
TrEMBLA0A3P6C9D30.0A0A3P6C9D3_BRAOL; Beta-amylase
STRINGBo4g025050.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29452535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.10.0beta-amylase 7
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]