PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_04055.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bZIP | ||||||||
Protein Properties | Length: 250aa MW: 29084.4 Da PI: 5.9772 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 44.3 | 3.8e-14 | 135 | 194 | 4 | 63 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 k+ +r+++NRe+A+rsR RK+ i +L + v +L+ eN++Lk++l+ + + +++++++ Rsa1.0_04055.1_g00003.1 135 EKKRKRMESNRESAKRSRMRKQSHINNLSNQVNQLDMENRELKNRLQLFTYQLQRVTTDN 194 6999*******************************************9998888877665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 2.2E-13 | 126 | 190 | No hit | No description |
SMART | SM00338 | 2.3E-16 | 132 | 196 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.427 | 134 | 197 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 6.9E-12 | 135 | 186 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.25E-11 | 136 | 189 | No hit | No description |
CDD | cd14702 | 1.00E-17 | 137 | 182 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 139 | 154 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MLSTVPAFSM SEPGLVNQFS GFQTGFTPWE WDSSDLFSVN QLSLEPAIPS PCYGESDSGL 60 IKINSYFGDI KTGSDEKHTG FNKIEPGFDE VHSSHGVPDE PDSDDPKQWT AIANSDSGEQ 120 NHNRTKLIQP EMTEEKKRKR MESNRESAKR SRMRKQSHIN NLSNQVNQLD MENRELKNRL 180 QLFTYQLQRV TTDNIQLVAE QDILRLRLSE MRRFQMIRQL QQQQQWELNN RRMIMTEQNP 240 SSITDHMIYK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 148 | 153 | KRSRMR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_04055.1_g00003.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018480866.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: basic leucine zipper 34 | ||||
TrEMBL | A0A3N6RPC9 | 1e-163 | A0A3N6RPC9_BRACR; Uncharacterized protein | ||||
STRING | Bo7g118720.1 | 1e-158 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7855 | 18 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37730.1 | 1e-108 | basic leucine-zipper 7 |