PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

ERF

Protein Properties

Length: 219aa MW: 24238.9 Da PI: 6.7978

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_04028.1_g00005.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	64.7	1.8e-20	69	118	3	56
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+W+AeIrdp + + +r++lg+f+tae Aa a+++a+ +++g+ Rsa1.0_04028.1_g00005.1 69 YRGVRQRP-WGKWAAEIRDP---N-KaARVWLGTFDTAEAAALAYDKAAFEFRGH 118 9*****.******9...3.35***********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	9.6E-15	68	118	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	24.974	68	125	IPR001471	AP2/ERF domain
SMART	SM00380	1.1E-38	68	131	IPR001471	AP2/ERF domain
CDD	cd00018	3.42E-25	68	127	No hit	No description
Gene3D	G3DSA:3.30.730.10	3.1E-33	68	126	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	9.81E-23	68	126	IPR016177	DNA-binding domain
PRINTS	PR00367	9.8E-12	69	80	IPR001471	AP2/ERF domain
PRINTS	PR00367	9.8E-12	91	107	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0005730	Cellular Component	nucleolus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MHSGKRPLSP ESMAGKTEEK EELGSCSTLS ESDVSAFVSE LTDQPTPPSI NQSSSLTPQE 60 QSNARQRNYR GVRQRPWGKW AAEIRDPNKA ARVWLGTFDT AEAAALAYDK AAFEFRGHKA 120 KLNFPEHILS NSTRPYPSTD TSHDRITVMP PPSIAPDILL DRYGQFDSAN IDSVANFSMN 180 MSSSSSSLNQ QEHIPKVEDA SMTGSEVKGL KRINHRCKE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	2e-25	64	125	1	63	ATERF1
3gcc_A	2e-25	64	125	1	63	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00289	DAP	Transfer from AT2G33710	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_04028.1_g00005.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189292	1e-81	AC189292.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB026E08, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018436341.1	1e-136	PREDICTED: ethylene-responsive transcription factor ERF112-like
Swissprot	P93007	2e-86	EF112_ARATH; Ethylene-responsive transcription factor ERF112
TrEMBL	A0A3P5ZCD5	1e-126	A0A3P5ZCD5_BRACM; Uncharacterized protein
STRING	Bo4g043530.1	1e-126	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33710.1	4e-79	ERF family protein