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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_04013.1_g00001.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
AP2 |
Protein Properties |
Length: 362aa MW: 40960.6 Da PI: 8.0325 |
Description |
AP2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_04013.1_g00001.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 53.1 | 7.8e-17 | 104 | 153 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g
Rsa1.0_04013.1_g00001.1 104 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAVKFRG 153
78*******************......55**********************99987 PP
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2 | AP2 | 42.7 | 1.4e-13 | 196 | 243 | 1 | 52 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52
s+y+GV+ +k grW+A++ + + k+++lg f+t+ eAa+a+++a+ k
Rsa1.0_04013.1_g00001.1 196 SKYRGVTLHK-CGRWEARLGQF----LNkKYVYLGLFDTEMEAARAYDKAAIK 243
89********.7******5553....234**********77*********987 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 362 aa
Download sequence Send
to blast |
MWNLNDSPDH HEESDGRWNR AGDVPISMSS SDMWLLSAPP VTRNFFPSQI MEQEVPGLIS 60 GSGFNRNQCL VRSDPSGSAR PENLELEITP PVKKSRRGPR SRSSQYRGVT FYRRTGRWES 120 HIWDCGKQVY LGGFDTAHAA ARAYDRAAVK FRGIDADINF NIEDYVEDVK QMSSLTKEEF 180 MHVIRRQSTG FPRGSSKYRG VTLHKCGRWE ARLGQFLNKK YVYLGLFDTE MEAARAYDKA 240 AIKSNGKDAV TNFDPKVYEE EHNSQAEKQW NDHSLDLCLG ESNSEEFGTK SEIGSMRNGF 300 RDEERLLGSH LSLAMTTTAT VGSDKQLDGG GKQVGMAASS GFSPRFPPWN HHTPRTFHFF 360 RP
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Functional Description ? help
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Source |
Description |
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). May regulate negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699, ECO:0000269|PubMed:15988559}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |