PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03999.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 362aa    MW: 39523.2 Da    PI: 6.1591
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03999.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.52.1e-072512901054
                              HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              + RR+++++ +  L++l+ +      +K + a++L++ +eYIk L
  Rsa1.0_03999.1_g00001.1 251 KVRRENLRDQITSLQQLVSPF-----GKTDTASVLQESIEYIKFL 290
                              67******************8.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.252241290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.03E-11251306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.58E-7251294No hitNo description
SMARTSM003530.0017251296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.4E-5251290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-9252297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MAEEFQATAA ICGSGGGAWW NSPRSVMSPS DNLLSSCFGQ RDADSDSGGS TVSIDSTLQM  60
MGLGFSSNSS SDWNETVLQE DLNSSFISSQ DHYQGQGFLS TTSSPYLLNP ACSSSSSPSS  120
SSSSLLQTLY DPEPSPYRFL STTSCSINDP QLSWASSKTS PHHQAVYGII NNFSNNTNSR  180
PFWSSSSTTN LNNTPHNSFI TTSQTIPTRL EDKTKNQKTK GQSESLKRAK NDESPSKKQR  240
ISTPSPLPTF KVRRENLRDQ ITSLQQLVSP FGKTDTASVL QESIEYIKFL HDQVIVLSTP  300
YMKQGASVQQ QHQESGKNQN GNENQELRAH GLCLVPVSST FPVANETTVD FWTPTFGGSS  360
FR
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03999.1_g00001.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018452285.10.0PREDICTED: transcription factor bHLH112-like
SwissprotQ94JL30.0BH112_ARATH; Transcription factor bHLH112
TrEMBLM4EE690.0M4EE69_BRARP; Uncharacterized protein
STRINGBra027080.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80622636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chen HC, et al.
    The function of OsbHLH068 is partially redundant with its homolog, AtbHLH112, in the regulation of the salt stress response but has opposite functions to control flowering in Arabidopsis.
    Plant Mol. Biol., 2017. 94(4-5): p. 531-548
    [PMID:28631168]