PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03968.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ARR-B
Protein Properties Length: 651aa    MW: 72176.4 Da    PI: 5.5387
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03968.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like92.82.9e-29204257155
                  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                              kpr++W++eLH++Fv+av+qL G +kA+Pk+il+ m+++gLt+e+v+SHLQkYRl
  Rsa1.0_03968.1_g00004.1 204 KPRVVWSQELHQKFVHAVQQL-GLDKAVPKKILDYMNIEGLTRENVASHLQKYRL 257
                              79*******************.********************************8 PP
2Response_reg70.76.1e-24231301109
                              EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHH CS
             Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeee 84 
                              vl vdD+p+ ++ l+++l + +y +v+ + ++++ale+l+ek   +Dl++ D+emp+ dG++ll+   e  ++lp+i+++ah++ +
  Rsa1.0_03968.1_g00004.1  23 VLAVDDNPTCLRKLEELLLRCKY-HVTKTMESKKALEMLREKSnmFDLVISDVEMPDTDGFKLLEIGLE--MDLPVIMLSAHSDYD 105
                              799********************.***************999999******************985344..57************* PP

                              HHHHHHHTTESEEEESS--HHHHHH CS
             Response_reg  85 dalealkaGakdflsKpfdpeelvk 109
                              ++ + +  Ga d+l+Kp++ +el++
  Rsa1.0_03968.1_g00004.1 106 TVMKGIIHGACDYLVKPVSLKELRN 130
                              **********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363924.6E-1571650IPR017053Response regulator B-type, plant
SuperFamilySSF521725.69E-3120137IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23009.8E-3520157No hitNo description
SMARTSM004482.2E-2721132IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011039.55422136IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.3E-2123131IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.29E-2045135No hitNo description
PROSITE profilePS5129412.774201260IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-29202261IPR009057Homeodomain-like
SuperFamilySSF466891.97E-20202261IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-25204257IPR006447Myb domain, plants
PfamPF002491.3E-9206256IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MENMESMSNE DGRTDQFPVG MRVLAVDDNP TCLRKLEELL LRCKYHVTKT MESKKALEML  60
REKSNMFDLV ISDVEMPDTD GFKLLEIGLE MDLPVIMLSA HSDYDTVMKG IIHGACDYLV  120
KPVSLKELRN IWQHVVKKNI GSYKKIIGGP SRHLLHSSES APSGSRKRKE NVQEDSGDGD  180
DSDREEEDGD GSEQDGDESS NRKKPRVVWS QELHQKFVHA VQQLGLDKAV PKKILDYMNI  240
EGLTRENVAS HLQKYRLYLK KLDEGQQQNM SHDAFGNRDS SYYHMAQLEG GLRDYSSTRH  300
LSTSSLLARS SLSKFHPSVY SSLNLQGSNS SPGFIQQGGH HQNSSSSANP FGTYHSPLLA  360
RSQSPLEPLQ FPRSKCSPYM GDFKGIGDRG IGSGFLDSRM TFGSSSSSLP SAASTNNLMM  420
QENFTHNLHG ASDGNQSCLD GAALSNSASL NTGVNGLSSF PSWQGNLRTT RFPSHSLPLN  480
HAFGQDQMTC GVTGLGDYNT SLVSADNHAG VMQCEPPFLG DFMHNMNNQK WEEQNCTMMN  540
NNNSFGNVDY PLQAADNNMV FRDHNATRSK GLDDSSLMMS PVEDSATTLN SRECVGNLTM  600
MDPEMRSAKL ENDLVDNHVF DDIMNEMLKQ DENNGMVSVA ARFGLDSFPP P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-22202262363ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00057PBMTransfer from AT5G58080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03968.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0240294e-44AB024029.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K21L19.
GenBankCP0026884e-44CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018468076.10.0PREDICTED: two-component response regulator ARR18
SwissprotQ9FGT70.0ARR18_ARATH; Two-component response regulator ARR18
TrEMBLA0A3P6D4E60.0A0A3P6D4E6_BRAOL; Uncharacterized protein
STRINGBo2g028820.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142821823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58080.10.0response regulator 18