PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03931.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 957aa    MW: 107900 Da    PI: 6.5075
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03931.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3391.5e-12715799195
                              EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                              ffk l     +++g +++p  f+++h  g++ +++   +l++  s +sWev    + +    +ltkGWkeF +a++L++g +v+Fk
  Rsa1.0_03931.1_g00003.1 715 FFKPL--LPGFQTG-VTIPLAFFSKHiqGNQINKP--WKLRSdASDESWEVIR--EDR----TLTKGWKEFTEAHDLRVGNIVIFK 789
                              56666..5566666.9**********975554555..555554999****987..444....4*********************** PP

                              E-SSSEE..EEE CS
                       B3  84 ldgrsefelvvk 95 
                              ++g + f  +v+
  Rsa1.0_03931.1_g00003.1 790 HEGAMVF--HVT 799
                              9988887..665 PP
2B357.32.8e-18836925494
                              E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                       B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                              ++++  + k + ++lp + +    +++ + k+++l ++ g+sW+  ++++ ++g+y++++GW++F+++n+   gD++vF ++g+ +
  Rsa1.0_03931.1_g00003.1 836 AEVTDKNQKDDKMYLPVEAMCCTALNQ-QCKEVKLVNKAGKSWSASFRFSESDGAYYISRGWRKFCHDNRCSNGDSFVFNVVGDGT 920
                              566788899999******984447665.668*************************************************999855 PP

                              E..EE CS
                       B3  90 felvv 94 
                              + +++
  Rsa1.0_03931.1_g00003.1 921 TAPLL 925
                              55554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105513.1E-19285379IPR018289MULE transposase domain
PfamPF044348.5E-7531560IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.953531563IPR007527Zinc finger, SWIM-type
SMARTSM005750.0013538565IPR006564Zinc finger, PMZ-type
Gene3DG3DSA:2.40.330.102.0E-18707806IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.02E-18710811IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.053712804IPR003340B3 DNA binding domain
CDDcd100171.50E-13713801No hitNo description
SMARTSM010198.0E-16715804IPR003340B3 DNA binding domain
PfamPF023622.1E-7723794IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-14833921IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.2E-14833930IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.31833931IPR003340B3 DNA binding domain
SMARTSM010194.7E-15834930IPR003340B3 DNA binding domain
PfamPF023621.8E-16837924IPR003340B3 DNA binding domain
CDDcd100175.50E-12844921No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 957 aa     Download sequence    Send to blast
MAYHEATAMV QDHSTLVVEP MNLWDEPSDE EAYWDAMAYE LFVAPSQQAV DGSIGLPLTQ  60
NRRICAPQPP PIIVVDDDSE GSYTGSFNDL NNMENNSALP PPDDVVLISM GVENIGRQVS  120
LIGESSAEMA IISNGNNGQN DNGFNPPFQA GETEPSLDLT LGLGMGNSCD EQTNDKKGED  180
SFDEAEDGSG YDEAATHNVI GEMIKYRFTG TGCGPRPNDI IQFMLWENGT SYQLLRDYLH  240
RLVMANPVTL AEIETVYQPG IGQQFKYMFL ALGASIQGFK QMRSVVIIDG AHLRGKFAGC  300
LLSASAQDGN YQVFSLVVAI VDGEKDKAWE WFFKMLLKFI PNNNEIVFVS DRHSSIYNGI  360
TKVYPAAHHC ACVMHLKRNI MTYFKNKNLG YLVGKAARAF QLSDFYNTFN EIKTINASCA  420
EYLIEIGFEH WARAHFAGNR YNVMTSNVAE TWNSVLREAR EYPIVALVEY IREKLMNWFA  480
ERRNHRTNSR GRLTHRVNQI LDSNFEDSAG MRVRRINHVE FEVNDKTGAT FHVNLAEKAC  540
SCFSFQKLLI PCPHAIAAAI KEKVCIKDLV SSYYSVETLA AAYAVDIVPI STQVQTTEDI  600
TEGEGEPSKI YPPRRRCPPG RPRKSRIMST GEIRIRRKET TLFTPPLTSL RSSFSPKAVR  660
RRSRVRFSPT VSSVRICLYL IHRACFTARN SENHNFTLDF EEGSLQMTTP QEPHFFKPLL  720
PGFQTGVTIP LAFFSKHIQG NQINKPWKLR SDASDESWEV IREDRTLTKG WKEFTEAHDL  780
RVGNIVIFKH EGAMVFHVTP FGPSCCEIEY NNPHIVNDEA DADDAPIFSY DYCFLAEVTD  840
KNQKDDKMYL PVEAMCCTAL NQQCKEVKLV NKAGKSWSAS FRFSESDGAY YISRGWRKFC  900
HDNRCSNGDS FVFNVVGDGT TAPLLFVRKG KGVPIKRYPI LLLAHGIRYL RCCVSYL
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03931.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1553381e-137AC155338.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH138P04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A397ZB340.0A0A397ZB34_BRACM; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.15e-52B3 family protein