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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_03930.1_g00002.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
M-type_MADS |
Protein Properties |
Length: 305aa MW: 35099.2 Da PI: 4.8999 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_03930.1_g00002.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 64.6 | 1e-20 | 11 | 58 | 3 | 50 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
+++s + +++ +R+ +i+KKA+EL +LCd+e++vi ++++g+l++++
Rsa1.0_03930.1_g00002.1 11 HSSYSLAATSLNNRLLTIFKKAQELTTLCDIEACVIHYGPDGELRTWP 58
58999******************************************8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 305 aa
Download sequence Send
to blast |
MRPPRCSNSS HSSYSLAATS LNNRLLTIFK KAQELTTLCD IEACVIHYGP DGELRTWPEN 60 RDKVRDLALR YIQLDEAKRR KKSLNLYEFL NKNKKTTKMT NNFKKKNAEE LKYPISDHYS 120 VDQINQLIQS LELSYFTLQE RRRFLAAKKQ NESLNPSQLT PLPQESGLTN QELCVYDQNN 180 NNNFQNLCVS AAQESGLHYQ LMPYGGGYYD QNMFVGNNYQ DPCVSSNTQD YSVFPLELQE 240 SLSNYGLNQL MPQELYGLDQ NMCMGDTINI NNNAQDPCLS DDFCFDFQDP YSGFMVGNPS 300 FSQDF
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |