PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03925.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 454aa    MW: 50960.9 Da    PI: 4.7999
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03925.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.63.8e-12247288854
                              HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                               Er RR + N++f+ L++l+P++     +K++ a+i+ +A++YIk+L
  Rsa1.0_03925.1_g00002.1 247 TERERRVHFNDRFSDLKSLIPNP-----TKNDRASIVGEAIDYIKEL 288
                              59*********************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.596239288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-13241302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-8245294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-9247288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.0E-12247300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.13E-11248293No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MEEERESIYE DMSCFDPNIP AQATAESSSG PPPPPPPQTM VAGSTSNSNC SVDVEELPEF  60
HLSPQDCPQP SSTPLQFHIN PLPPPQYQNN DIDLIHQMAH DQHQQQQVNW ENGYQDFANM  120
VPNSSTTPDL LSLLHLPRCS LPQSMLPNSF SDIMSSSSAA AVMYDPLFHL NFPLQTRDHQ  180
RNNSCFLGVE DQIDQMDANG GGINMMYYEG VNNNNNGGFD NGVLEFSSGG GNNRKGRGSG  240
KSRTFPTERE RRVHFNDRFS DLKSLIPNPT KNDRASIVGE AIDYIKELLR TIEDLKMLVE  300
KKKFGKFRSK KRARVGGEEE EEEDQEGEGD TVVYKPKSEV DQSCFNNNNK ALRCSWLKRK  360
SKVTEVDVRI IDDEVTIKVV QKKKINCLLF TTRVLDQLQL DLHHVAGGQI GEHYSFLFNT  420
KICEGSCVYA SGIADTVMEV VEKQYMEAVP PNGY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00285DAPTransfer from AT2G31220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03925.1_g00002.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018437135.10.0PREDICTED: transcription factor bHLH10-like
SwissprotQ84TK10.0BH010_ARATH; Transcription factor bHLH10
TrEMBLA0A3N6QTS00.0A0A3N6QTS0_BRACR; Uncharacterized protein
STRINGBo4g052460.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13552696
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31220.11e-171bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Cui J, et al.
    Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development.
    Plant Cell, 2016. 28(5): p. 1078-93
    [PMID:27113773]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]