PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03898.1_g00007.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 254aa    MW: 29374 Da    PI: 8.9948
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03898.1_g00007.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.27.9e-50141341128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                              lppGfrFhPtdeelvv+yL +kv+g +l++  vi+e+di+k+ePwdLp    + ++e yfFs+r+ ky++g+r+nr+t sgyWkat
  Rsa1.0_03898.1_g00007.1  14 LPPGFRFHPTDEELVVQYLSRKVSGLPLPA-YVIPEIDICKTEPWDLPG---GCDSERYFFSTREAKYPNGNRSNRSTGSGYWKAT 95 
                              79***************************9.89***************4...45789***************************** PP

                      NAM  87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                              g d+++ +   ++ g+kktLvfykg+ p+g++t+Wv+heyrl
  Rsa1.0_03898.1_g00007.1  96 GIDRQIGK---NVFGMKKTLVFYKGKPPNGTRTNWVLHEYRL 134
                              ******77...89***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.8E-588156IPR003441NAC domain
PROSITE profilePS5100556.23614156IPR003441NAC domain
PfamPF023652.6E-2615134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MEKRSSIENR KMRLPPGFRF HPTDEELVVQ YLSRKVSGLP LPAYVIPEID ICKTEPWDLP  60
GGCDSERYFF STREAKYPNG NRSNRSTGSG YWKATGIDRQ IGKNVFGMKK TLVFYKGKPP  120
NGTRTNWVLH EYRLVDSQHG SYGENTNWVL CRVFLKNRSN NNSKKKENER EEKKEGRERD  180
DNKSTCPIFY DFLGNDVKNR RCCDLNLTRT FCCCSSSASS SVCSSALTQT SFNIDSDNHH  240
EEISCRENKF RLFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-511115917171NAC domain-containing protein 19
3swm_B4e-511115917171NAC domain-containing protein 19
3swm_C4e-511115917171NAC domain-containing protein 19
3swm_D4e-511115917171NAC domain-containing protein 19
3swp_A4e-511115917171NAC domain-containing protein 19
3swp_B4e-511115917171NAC domain-containing protein 19
3swp_C4e-511115917171NAC domain-containing protein 19
3swp_D4e-511115917171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of the mannan synthase CSLA9. Recognizes and binds to DNA-specific sequence of CSLA9 promoter. {ECO:0000269|PubMed:24243147}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03898.1_g00007.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM9756680.0KM975668.1 Brassica napus NAC transcription factor 41.1 (NAC41.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018437718.11e-153PREDICTED: NAC domain-containing protein 41-like
SwissprotO227981e-109NAC41_ARATH; NAC domain-containing protein 41
TrEMBLA0A078FWR01e-130A0A078FWR0_BRANA; BnaA05g10110D protein
TrEMBLA0A397ZCD51e-130A0A397ZCD5_BRACM; Uncharacterized protein
TrEMBLM4CMQ41e-130M4CMQ4_BRARP; Uncharacterized protein
STRINGBra005492.1-P1e-131(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18062786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.11e-103NAC domain containing protein 41
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]