PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03809.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 701aa    MW: 79830.8 Da    PI: 5.8147
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03809.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS347.22.6e-1063226982373
                     GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfse 86 
                              ++lL+ cA+ +ssgd+ +a++lL+++++++sp gd+ qRla +ft+AL+arl++s+  + ++   + ++++++ ++ l+ +k+f  
  Rsa1.0_03809.1_g00002.1 322 RTLLTLCAQSISSGDKLAADELLKQIKKQCSPLGDASQRLAYFFTKALEARLQGSSGVMIQSYyDSITSKKRTAAQILKTYKAFLS 407
                              6799**************************************************55555555427777777779************ PP

                     GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAe 170
                              +sP++++ ++  N++Il+a + ++ +HiiDf+i +G+QWp ++q +++ + gp +lRiT+v+ p++g   +e++e tg+rL+++++
  Rsa1.0_03809.1_g00002.1 408 ASPFMTLIYFFSNKMILDASKDASVLHIIDFGILYGFQWPMFIQYISKSKTGPRKLRITAVELPQNGfrPTEKIEDTGRRLREYCK 493
                              ******************************************************************9******************* PP

                     GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFle 255
                              ++gvpfe+n++++k++e+++lee++++p+E+laVn+vl+ ++l d +   e+ +rd +Lkl+++++P+v+  +  + + n++ F++
  Rsa1.0_03809.1_g00002.1 494 RFGVPFEYNAIASKNWETIRLEEFKIRPNEVLAVNSVLRFKNLRDVTPGEEDcPRDGFLKLIRDMKPDVFLSSTINGSFNAPFFAT 579
                              ***********99*******************************9999999889******************************** PP

                     GRAS 256 rflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklll 341
                              rf eal +ys+lfd++ ++l++e+ er+  E e++gre++nv+aceg +r+er et+++W+ r+ +aGFk+ p++ + +++ +  +
  Rsa1.0_03809.1_g00002.1 580 RFKEALFHYSSLFDMFGSTLSKENPERMHFEGEFFGREVMNVIACEGVDRVERPETYKQWQVRMVRAGFKQKPVEAELMESFREKM 665
                              ************************************************************************************** PP

                     GRAS 342 rkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                              +k +  + + ++++s+++++gWk+r L+s S+W
  Rsa1.0_03809.1_g00002.1 666 KKWGyHKDFVLDQDSNWFLQGWKGRILFSSSCW 698
                              **999999************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.429295678IPR005202Transcription factor GRAS
PfamPF035149.1E-104322698IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
MESNLSRIVN GYEYYDVSFL PNQIPNLGFG VPSMSEFDLS TNHHHHQPSI WVPATEQDKD  60
LDQLHHHDQY SPPASDEIDS ENTLLKYVNQ LLMEEETLSE SQSMSSYDAL ALRQTEEMLQ  120
QVINDSLAQS PYITPPDSIT SSTTSSGGSS GGGGEYLNSN SNSCVRIETE ADSAVSLRGF  180
GQPANEILVR SMFSDADSVN QFKRGLEEAS KFLPNTDQWI FNLEQEVVPV KDEKGFSRVR  240
KHHYNHEPEE EARRSSKQSA ANVDDGNITE LFDKVLLLDN QLNPHIKEEE EEADVNNVSS  300
KSPANTKEGG RAKKKSKAVD FRTLLTLCAQ SISSGDKLAA DELLKQIKKQ CSPLGDASQR  360
LAYFFTKALE ARLQGSSGVM IQSYYDSITS KKRTAAQILK TYKAFLSASP FMTLIYFFSN  420
KMILDASKDA SVLHIIDFGI LYGFQWPMFI QYISKSKTGP RKLRITAVEL PQNGFRPTEK  480
IEDTGRRLRE YCKRFGVPFE YNAIASKNWE TIRLEEFKIR PNEVLAVNSV LRFKNLRDVT  540
PGEEDCPRDG FLKLIRDMKP DVFLSSTING SFNAPFFATR FKEALFHYSS LFDMFGSTLS  600
KENPERMHFE GEFFGREVMN VIACEGVDRV ERPETYKQWQ VRMVRAGFKQ KPVEAELMES  660
FREKMKKWGY HKDFVLDQDS NWFLQGWKGR ILFSSSCWVP S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-4432869811374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03809.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018487014.10.0PREDICTED: scarecrow-like protein 31
SwissprotQ3EDH00.0SCL31_ARATH; Scarecrow-like protein 31
TrEMBLA0A397Y5K80.0A0A397Y5K8_BRACM; Uncharacterized protein
STRINGBo8g114030.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM135111728
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07520.10.0GRAS family protein