![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rsa1.0_03700.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 348aa MW: 38903.5 Da PI: 5.4081 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49 | 1.4e-15 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEd++l ++++ G g+W++ ++ g++R++k+c++rw +yl Rsa1.0_03700.1_g00005.1 15 KGPWVPEEDDKLTAYIEKNGYGNWRSLPKLAGLNRCGKSCRLRWMNYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 55.8 | 1.1e-17 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++ eE+ +v+++++lG++ W++Ia++++ gRt++++k++w++++ Rsa1.0_03700.1_g00005.1 68 RGEFSDEEESTIVRLHALLGNK-WSKIASHLP-GRTDNEIKNYWNTHM 113 899*******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.913 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.99E-30 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.0E-12 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.7E-14 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.6E-23 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.10E-10 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 26.534 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.0E-16 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.3E-16 | 68 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.55E-12 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.1E-27 | 70 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 348 aa Download sequence Send to blast |
MGRSPCCDQD KGVKKGPWVP EEDDKLTAYI EKNGYGNWRS LPKLAGLNRC GKSCRLRWMN 60 YLRPDIRRGE FSDEEESTIV RLHALLGNKW SKIASHLPGR TDNEIKNYWN THMRKKMLQM 120 GIDPITHEPR TNDLSPILDV SQMLAAAIST GQLGNSNFLN NNNTSLEDLL KLQLIHKMLL 180 IITPKAIPNS FTTNSLDPKP EAVVNSYNTN SVNPKPEQAA GHLNANEQHV IINQSENEDF 240 MQSFEHIWDG YENNQLPGLV TVSQKNLNSA KPGIITGYHG DQLSEIPSNG SLSVSPETSS 300 LNYPGTTQPS TGPDVLEDWE KFLDDETSDS CWKSFLDLTS PTSSPGPW |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-26 | 15 | 117 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00438 | DAP | Transfer from AT4G17785 | Download |
![]() |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Rsa1.0_03700.1_g00005.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC183492 | 0.0 | AC183492.1 Brassica oleracea Contig G, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018469165.1 | 0.0 | PREDICTED: transcription factor MYB39-like | ||||
Swissprot | Q8GWP0 | 0.0 | MYB39_ARATH; Transcription factor MYB39 | ||||
TrEMBL | A0A078IU41 | 0.0 | A0A078IU41_BRANA; BnaAnng13560D protein | ||||
TrEMBL | A0A3P6EUJ9 | 0.0 | A0A3P6EUJ9_BRAOL; Uncharacterized protein | ||||
STRING | Bra040181.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12243 | 17 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G17785.1 | 0.0 | myb domain protein 39 |