PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03671.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 276aa    MW: 30980.7 Da    PI: 8.2458
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03671.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23e-05168190123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              y+C+ Cgk+F++   L  H  +H
  Rsa1.0_03671.1_g00001.1 168 YTCETCGKVFKSYQALGGHRASH 190
                              9************9999998887 PP
2zf-C2H210.70.0017214236123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++Cp+C ++F +   L  H r+H
  Rsa1.0_03671.1_g00001.1 214 HECPICLRVFASGQALGGHKRSH 236
                              79*****************9999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139120.033416IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.1E-4159193IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139124.0E-11168192IPR007087Zinc finger, C2H2
SMARTSM003550.011168190IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.24168195IPR007087Zinc finger, C2H2
SuperFamilySSF576672.18E-7168236No hitNo description
PROSITE patternPS000280170190IPR007087Zinc finger, C2H2
PfamPF139124.6E-12214236IPR007087Zinc finger, C2H2
SMARTSM003550.23214236IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.058214236IPR007087Zinc finger, C2H2
PROSITE patternPS000280216236IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
FVNGRALGGH MRSHMPSLHK FSIQEEEERP SQLSIESKSN VSSSSEEIEE ISGLREEKHR  60
TMDDGSETES SRNIVNLTRK RSKRTRKLDS FSSKKMIKTS QLGYEPEAEA PHSSASDTTT  120
EEDLAFCLMM LSRDKWKKNK VSSHKEVVEA IDVEASEGYK IHTTKGRYTC ETCGKVFKSY  180
QALGGHRASH KKNRVSNKTE YDAVVVAAPE KRIHECPICL RVFASGQALG GHKRSHGLGN  240
LSVNHQVDRT EPVKQRILDL NLPAPTEEDE VSVVFQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03671.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893190.0AC189319.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB036H01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018489522.10.0PREDICTED: zinc finger protein ZAT9
SwissprotQ9M2021e-125ZAT9_ARATH; Zinc finger protein ZAT9
TrEMBLA0A0D3DUM81e-151A0A0D3DUM8_BRAOL; Uncharacterized protein
TrEMBLA0A3P6GD651e-151A0A3P6GD65_BRAOL; Uncharacterized protein
STRINGBo8g095300.11e-152(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-112C2H2-like zinc finger protein