PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03607.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 298aa    MW: 33875.5 Da    PI: 8.7933
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03607.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1023.5e-32217275159
                              ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver a+dp++v++tYeg+H h+
  Rsa1.0_03607.1_g00003.1 217 LDDGYRWRKYGQKVVKNTQHPRSYYRCTQDKCRVKKRVERLADDPRMVITTYEGRHLHS 275
                              59*******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-33202275IPR003657WRKY domain
SuperFamilySSF1182903.27E-28210276IPR003657WRKY domain
PROSITE profilePS5081129.356212277IPR003657WRKY domain
SMARTSM007749.9E-37217276IPR003657WRKY domain
PfamPF031064.0E-25218274IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MGPINQGVSL FGEPQNIINP NDTNNLGFFF SFPSHTLSSS SSPSSLVSPF LGHHSFNSFI  60
QNNSPSFVTH PQHPISPMAN LPETLISISS LASLKQRHDH GDIANLDQDR LTGGKPSQRL  120
SLNPWAWSSQ AGYEYNKKNN HGSEIDVDRN INDDVGDGDG DGINDDDHHQ HHETRRHKIN  180
TSPLGMVSTL KMKKPKTRRK VREPRFCFKT LSDVDVLDDG YRWRKYGQKV VKNTQHPRSY  240
YRCTQDKCRV KKRVERLADD PRMVITTYEG RHLHSPSNHL DDDSLSSSHH SPLSNFFW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-25209274974Probable WRKY transcription factor 4
2lex_A9e-25209274974Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03607.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5931400.0KM593140.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY32) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018447706.11e-170PREDICTED: probable WRKY transcription factor 13 isoform X1
SwissprotQ9SVB71e-135WRK13_ARATH; Probable WRKY transcription factor 13
TrEMBLA0A397YCD81e-147A0A397YCD8_BRACM; Uncharacterized protein
STRINGBra011861.1-P1e-148(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61062746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.11e-107WRKY DNA-binding protein 13