PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_03577.1_g00002.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

FAR1

Protein Properties

Length: 475aa MW: 54348.6 Da PI: 4.9962

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_03577.1_g00002.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.5	1.5e-20	108	191	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 Y++Y+ + GF+vr+++++++ n++ ++ +vCskeg+r+e+k k ++ +r++tr+gC+a++ ++++g++++ ++e++HnH Rsa1.0_03577.1_g00002.1 108 AYRKYGGNHGFDVRRQRTSRK--NQKLVRMVYVCSKEGFRQESKVK---TSFSRPTTRCGCQARISCYLQSNGRYKIVTFEQNHNH 188 59**********9986665..999************9877...999******************************** PP FAR1 88 ela 90 +l+ Rsa1.0_03577.1_g00002.1 189 DLV 191 *97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.0E-17	108	191	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.3E-35	313	407	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence Send to blast
MESSHLSGKE TDSAGEDESN LQVSGETSLL SQKSDEFLAE EKDVTLNDDD SDEDASVSDD 60 DEEKDICNNE DYLQTEDVGS LEASNENQKK SELCIGMEFS SDESAYKAYR KYGGNHGFDV 120 RRQRTSRKNQ KLVRMVYVCS KEGFRQESKV KTSFSRPTTR CGCQARISCY LQSNGRYKIV 180 TFEQNHNHDL VRTPMKHLLK SNRAISVSQK QHADDADMSG ISAKATIEMM SREVGGRANL 240 GFVDKDLKNY IYRKRMAAME KGDAGAVLEY FQKKKEDNPS FFYSMQLDED DMITNIFWAD 300 DRSISDYNLF GDVLCFDTTY KTNECDKPFA PFVGVNHHKQ TIVFGAALLY DETTESFEWL 360 FQTFLGAMSG KQPQTIFTDQ CAAMANAIGK LFPETKHRLC VWHIYQNAAK RLSRVFHGPD 420 QFATDFGKCV FDHENEAEWL SAWSEMLEKH GLTENKWLKD LFGLREKWAM CYQLL

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence Send to blast

MESSHLSGKE TDSAGEDESN LQVSGETSLL SQKSDEFLAE EKDVTLNDDD SDEDASVSDD  60
DEEKDICNNE DYLQTEDVGS LEASNENQKK SELCIGMEFS SDESAYKAYR KYGGNHGFDV  120
RRQRTSRKNQ KLVRMVYVCS KEGFRQESKV KTSFSRPTTR CGCQARISCY LQSNGRYKIV  180
TFEQNHNHDL VRTPMKHLLK SNRAISVSQK QHADDADMSG ISAKATIEMM SREVGGRANL  240
GFVDKDLKNY IYRKRMAAME KGDAGAVLEY FQKKKEDNPS FFYSMQLDED DMITNIFWAD  300
DRSISDYNLF GDVLCFDTTY KTNECDKPFA PFVGVNHHKQ TIVFGAALLY DETTESFEWL  360
FQTFLGAMSG KQPQTIFTDQ CAAMANAIGK LFPETKHRLC VWHIYQNAAK RLSRVFHGPD  420
QFATDFGKCV FDHENEAEWL SAWSEMLEKH GLTENKWLKD LFGLREKWAM CYQLL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_03577.1_g00002.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018479713.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A3P6BEF3	0.0	A0A3P6BEF3_BRAOL; Uncharacterized protein (Fragment)
STRING	Bo02148s010.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-90	FAR1-related sequence 5