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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_03462.1_g00003.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
MIKC_MADS |
Protein Properties |
Length: 258aa MW: 28725.3 Da PI: 6.5285 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_03462.1_g00003.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 90 | 1.2e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
k+ien rqvtfskRrng++KKA+ELS+LCdaeva+iifsstgk+y++ss
Rsa1.0_03462.1_g00003.1 9 KKIENVNSRQVTFSKRRNGLMKKAKELSILCDAEVALIIFSSTGKVYDFSS 59
68***********************************************96 PP
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2 | K-box | 58.5 | 2.8e-20 | 104 | 181 | 22 | 99 |
K-box 22 akLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99
+ +k+e+e Lq + +l+G++Le +s+ +L +Le+qL++sl +++++K+++ll+q+e+++ ke+++ een+ Lrk++e
Rsa1.0_03462.1_g00003.1 104 DAMKNELERLQLAIQRLKGKELEGMSFSDLISLENQLNDSLHSVKDQKTQILLNQVERSRLKERRALEENQILRKQVE 181
679************************************************************************997 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00432 | 6.2E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.959 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.19E-41 | 2 | 75 | No hit | No description |
SuperFamily | SSF55455 | 2.09E-31 | 2 | 79 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.4E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.1E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.4E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.4E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 12.442 | 96 | 186 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 4.0E-16 | 104 | 180 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009555 | Biological Process | pollen development |
GO:0009910 | Biological Process | negative regulation of flower development |
GO:0048577 | Biological Process | negative regulation of short-day photoperiodism, flowering |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 258 aa
Download sequence Send
to blast |
MGRGRIEIKK IENVNSRQVT FSKRRNGLMK KAKELSILCD AEVALIIFSS TGKVYDFSSG 60 CMEQTLSRYG HTAASADHKP KEEEEQLLLC SSQENGAVVL RKDDAMKNEL ERLQLAIQRL 120 KGKELEGMSF SDLISLENQL NDSLHSVKDQ KTQILLNQVE RSRLKERRAL EENQILRKQV 180 EMLGRGSSGP KGLSEIPQFS SPQAEPESSS SDDDDENDLH SDTSLQLGLS SSGYCTKRKK 240 PKIESPCGYN SGSQVASD
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Prevents premature flowering. Downstream regulator of a subset of the MIKC* MADS-controlled genes required during pollen maturation. {ECO:0000269|PubMed:17521410, ECO:0000269|PubMed:18034896, ECO:0000269|PubMed:18799658}. |