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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Rsa1.0_03446.1_g00003.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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| Family | C3H | ||||||||
| Protein Properties | Length: 388aa MW: 40653 Da PI: 7.7177 | ||||||||
| Description | C3H family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-CCCH | 38 | 2.8e-12 | 74 | 99 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
+++ C++f+rtG Ck+G++Ck++H++
Rsa1.0_03446.1_g00003.1 74 GQPVCQHFMRTGDCKFGASCKYHHPR 99
5789********************96 PP
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| 2 | zf-CCCH | 40.9 | 3.3e-13 | 124 | 148 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
++++C++++rtG+Ck+G++CkF+H+
Rsa1.0_03446.1_g00003.1 124 GEKECPYYMRTGQCKFGSTCKFHHP 148
7899********************9 PP
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| 3 | zf-CCCH | 36.7 | 7.2e-12 | 247 | 272 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
+++++C +f+rtG CkyG +C+++H+
Rsa1.0_03446.1_g00003.1 247 PGQPECTYFLRTGDCKYGTSCRYHHP 272
5789*********************9 PP
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| 4 | zf-CCCH | 31.9 | 2.2e-10 | 292 | 317 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
++t+ C++fa+ G+Ck G+ CkF H+
Rsa1.0_03446.1_g00003.1 292 PGTAQCSHFAQHGICKLGPACKFDHS 317
689**********************8 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50103 | 15.76 | 72 | 100 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.2E-5 | 72 | 99 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 4.19E-6 | 74 | 100 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.0E-9 | 74 | 99 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 6.3E-5 | 77 | 99 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 9.7E-7 | 122 | 149 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.854 | 122 | 150 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 6.0E-11 | 124 | 148 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.7E-6 | 125 | 150 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 6.2E-5 | 128 | 147 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.591 | 246 | 274 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 3.0E-6 | 246 | 273 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 6.1E-9 | 248 | 272 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 5.1E-6 | 250 | 274 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.1E-4 | 252 | 272 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.9E-4 | 291 | 318 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.366 | 291 | 319 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 2.22E-5 | 292 | 318 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 7.5E-8 | 292 | 317 | IPR000571 | Zinc finger, CCCH-type |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046872 | Molecular Function | metal ion binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 388 aa Download sequence Send to blast |
MEQHGGGGTG DEGSLSDPVT DTGLEASMSR LGLGGGGSES YPKRPDEPDC VYYLRTGVSG 60 DLRTEAGEVP ERMGQPVCQH FMRTGDCKFG ASCKYHHPRQ GSGGGDSVTS PISFNHMGFP 120 LRPGEKECPY YMRTGQCKFG STCKFHHPVP PGDHQAPSHH PLPTSPPAIY PSQQFGVVVP 180 RPYPTYSQMV LSPGMVGWNP YQASVSAIPS PGTPSSVYGT KPLSPSAPAY QSGSASSNKE 240 QSFPQRPGQP ECTYFLRTGD CKYGTSCRYH HPLEAASPKG ISLSHIGLPL RPGTAQCSHF 300 AQHGICKLGP ACKFDHSSSL STLAPSLSSS SDQGTEVHSS SSIKPKTTAS GESETVAAGV 360 SSSSSMTGGV SNSKPAESKN GDSAKHSG |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Rsa1.0_03446.1_g00003.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_018463879.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 58-like | ||||
| Refseq | XP_018463880.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 58-like | ||||
| Swissprot | Q6NPN3 | 1e-165 | C3H58_ARATH; Zinc finger CCCH domain-containing protein 58 | ||||
| TrEMBL | A0A3P6A222 | 0.0 | A0A3P6A222_BRACM; Uncharacterized protein | ||||
| STRING | Bo3g013210.1 | 0.0 | (Brassica oleracea) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM1779 | 27 | 86 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G18550.1 | 1e-147 | C3H family protein | ||||
| Publications ? help Back to Top | |||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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