PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_03429.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 264aa MW: 30631.4 Da PI: 8.7783 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 69.5 | 3e-22 | 4 | 50 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +n+sn qvtfskR+ g++KKA+EL++LC+ae+ vi+fs+ k++ + Rsa1.0_03429.1_g00003.1 4 MKNESNLQVTFSKRKSGLFKKASELCTLCGAEIVVIVFSPGRKVFSF 50 68**************************************9999877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.9E-23 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 20.731 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.26E-23 | 2 | 74 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.4E-23 | 3 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-9 | 16 | 31 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-9 | 31 | 52 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MAKMKNESNL QVTFSKRKSG LFKKASELCT LCGAEIVVIV FSPGRKVFSF GHPNVDVVID 60 RFLNINPRHP HQNINLQLNE ARQNYVVQDL NDHLAQVTEQ LEVEKKRNED LKQKRKDDKR 120 SKNWWEDPVE GFNLRQLTEF KSGLKILKKK VTTEASKYLQ ATGHNFYFGS SSNAGFGTFD 180 DDDGNNNSDL DLFNHRRLVG MKTFSCNHQN MIIPHPSTTP YGNAVIERFA PEHNQNKNQY 240 CLKQERCECD HQPDPPPHFR HHYY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_03429.1_g00003.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018435462.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
Swissprot | Q9FKK2 | 2e-92 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A0D3AC90 | 1e-161 | A0A0D3AC90_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6FY61 | 1e-161 | A0A3P6FY61_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g112460.1 | 1e-162 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-85 | AGAMOUS-like 62 |
Publications ? help Back to Top | |||
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