 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Rsa1.0_03401.1_g00005.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
C3H |
| Protein Properties |
Length: 135aa MW: 15263.7 Da PI: 8.9991 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Rsa1.0_03401.1_g00005.1 | genome | RGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 33.1 | 9.6e-11 | 1 | 20 | 8 | 27 |
GGGGTS--TTTTT-SS-SSS CS
zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27
+f++tG CkyG++CkF+H++
Rsa1.0_03401.1_g00005.1 1 YFLKTGACKYGSTCKFHHPK 20
8*****************96 PP
|
| 2 | zf-CCCH | 30.7 | 5.5e-10 | 41 | 64 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26
++ C+++ +tG C++G CkF+H+
Rsa1.0_03401.1_g00005.1 41 EKSCPYYVQTGMCRFGVACKFHHP 64
667********************8 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00356 | 3.5 | 1 | 20 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 8.11E-5 | 1 | 21 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.3E-8 | 1 | 20 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 8.9E-5 | 1 | 19 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.925 | 1 | 21 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 9.81E-7 | 37 | 66 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 2.6E-4 | 38 | 65 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.479 | 38 | 66 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 5.9E-7 | 40 | 64 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.7E-4 | 43 | 63 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 135 aa
Download sequence Send
to blast |
YFLKTGACKY GSTCKFHHPK DRNGAEPVLF NVLGYPMRQG EKSCPYYVQT GMCRFGVACK 60
FHHPHPQPHN NNGHSTTYGM PTFPYGMMSL PPATYGVMPP PQVPYPQTYM PFIFAPPQGW 120
SPYMVSLNYL CSCLK
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AF138744 | 8e-54 | AF138744.1 Arabidopsis thaliana zinc finger protein 2 (zfn2) mRNA, complete cds. |
