PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03378.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 570aa    MW: 64970.7 Da    PI: 5.7522
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03378.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS388.95.6e-1191955651374
                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                              +++lL++cA+av+s d++ a + L++++ ++s++gd++qRl  +f+eAL+ar+++    + k+  + + s +++ + l+a+k f++
  Rsa1.0_03378.1_g00001.1 195 MRNLLMQCAQAVASFDQKSAAEKLEEIRAHSSSHGDATQRLGYHFAEALEARITG----TIKTPISATFSGTSMFDILTAYKEFVQ 276
                              579****************************************************....5555556666667799*********** PP

                     GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAe 170
                              ++P+l +++ taN++I e +++++++HiiDf+i +G+QWp+L++aL+ Rp+gpp+lR+Tg++ p++g   +e++eetg+rL++f++
  Rsa1.0_03378.1_g00001.1 277 ACPTLIMCYYTANRTIIELASKATTLHIIDFGILYGFQWPCLIKALSRRPGGPPMLRVTGIELPQPGfrPSERVEETGRRLKRFCD 362
                              ******************************************************************9******************* PP

                     GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256
                              +++vpfe+++ +ak++e+++l+eL +++gE+++Vn++l+l++++de+vsl+s+rd+ Lkl+++++P+++v+++   ++ns+ Fl+r
  Rsa1.0_03378.1_g00001.1 363 KFKVPFEYSF-IAKNWETITLDELVINSGETTVVNCILRLQYTPDETVSLDSPRDTALKLFRDINPDLFVFADIHGKYNSPFFLTR 447
                              **********.7************************************************************************** PP

                     GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                              f eal ++s+lfd++ +++++e++ r+ vErel+ r++++v+aceg+er++r et+++W+ r+ +aGF+p +l++++ k+ k l+r
  Rsa1.0_03378.1_g00001.1 448 FREALFHCSSLFDMFGTTISEENNCRTLVERELIIRDAMSVIACEGSERFARPETYKQWQVRILRAGFRPTKLNKEIIKEGKELIR 533
                              ************************************************************************************** PP

                     GRAS 343 kvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                              + + + + ++++++++++gWk+r L+++S+W+
  Rsa1.0_03378.1_g00001.1 534 ERYHKDFVIDSDNHWMFQGWKGRVLYALSCWK 565
                              ***888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.799169545IPR005202Transcription factor GRAS
PfamPF035141.9E-116195565IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MDTILQVPAD GFKFDNSFGS CCKPRNNLES GTKIFTCFYE SKNPSPTEST ECSEYHPVLK  60
YINDMLMEED LEGQSCMLED SLALQAAERS FFEVLQEGQT PPPSVTSLLQ PTSEESTRRY  120
RLRDDDEEDD LEGGRRSKLP AISTVDEVAE NMEEVLLVCQ NNNHGGEATR NKPGREKGSS  180
SNRTKPQKSD QAVDMRNLLM QCAQAVASFD QKSAAEKLEE IRAHSSSHGD ATQRLGYHFA  240
EALEARITGT IKTPISATFS GTSMFDILTA YKEFVQACPT LIMCYYTANR TIIELASKAT  300
TLHIIDFGIL YGFQWPCLIK ALSRRPGGPP MLRVTGIELP QPGFRPSERV EETGRRLKRF  360
CDKFKVPFEY SFIAKNWETI TLDELVINSG ETTVVNCILR LQYTPDETVS LDSPRDTALK  420
LFRDINPDLF VFADIHGKYN SPFFLTRFRE ALFHCSSLFD MFGTTISEEN NCRTLVEREL  480
IIRDAMSVIA CEGSERFARP ETYKQWQVRI LRAGFRPTKL NKEIIKEGKE LIRERYHKDF  540
VIDSDNHWMF QGWKGRVLYA LSCWKPAKKQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-441785661380Protein SCARECROW
5b3h_A3e-4420156624379Protein SCARECROW
5b3h_D3e-4420156624379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03378.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018433919.10.0PREDICTED: scarecrow-like protein 30
SwissprotQ9SNB80.0SCL30_ARATH; Scarecrow-like protein 30
TrEMBLD7LN250.0D7LN25_ARALL; Scarecrow transcription factor family protein
STRINGscaffold_501562.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36462561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46600.10.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]