PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03345.1_g00005.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family FAR1
Protein Properties Length: 783aa    MW: 89205.5 Da    PI: 6.7373
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03345.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR139.81.5e-12111178274
                     FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdg 74 
                               Y++Y+++ GF+vr++++ k+  n++ ++  +vCskeg+r+e k +    + +r++tr+gCka++   +++++
  Rsa1.0_03345.1_g00005.1 111 AYRKYGSSHGFDVRRQRTAKK--NNKLVRMVYVCSKEGFRQEPKVN---ISYSRPTTRCGCKARMSCYLQTKA 178
                              59*************998887..7779***************9988...999*************99888654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.5E-9111177IPR004330FAR1 DNA binding domain
PfamPF105515.3E-36266360IPR018289MULE transposase domain
PROSITE profilePS509669.421536583IPR007527Zinc finger, SWIM-type
PfamPF044342.6E-5555581IPR007527Zinc finger, SWIM-type
SMARTSM005751.5E-4558585IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 783 aa     Download sequence    Send to blast
MESPHLSGEE NVPASHDESS LQVSGGTSLL SQNSDEFLAE EKDAPVSDGD ASVSDGDASV  60
EDFGEKDDIS NYEDCLQIED VDALEAKNEN QNNHELCIGM DFSSDESAYK AYRKYGSSHG  120
FDVRRQRTAK KNNKLVRMVY VCSKEGFRQE PKVNISYSRP TTRCGCKARM SCYLQTKATV  180
EMMSREVGGQ ANLGFMHKDL KNYIYRKRMA AMEKGDAGAV LEYFQKKKEE NASFFYSMQL  240
DEDDMITNIF WADDRSISDY NLFGDVVCFD STYKTNEYDR PFAPFVGVNH HKQTIVFGAA  300
LLYDETTESF EWLFQTFLGT MSGKQPQTIL TDQCAAMANA IGKVLPETKH RLCVWHIYQN  360
AAKRLSRVFH GPDQFVTDFR DCVDDHENEA EWLSAWSEML EKHGLTENKW LKNLFELREK  420
WARVYGRQTF TADMMSTQRS ESMNNILKKY LKGSYNLLRF FTHYERALDD RRFKELTADF  480
GMMHTSPVLS APVEMLQHAV DVYTPEVFTL FQKEYTAIGD YVAKRVNKSE MVSAEYNVSF  540
RGVGRNHLVT YVAGDETIHC SCMKFSFAGI LCRHALKVLA KKDVRRIPPA YILNRWSKEA  600
KARTIPFYHS ANPNDTVKES IGKRYSHICR TFREIASVAA EHIELTGCAD EAAFQLLDKL  660
KEKKKELVKA NKWILPASDL ELVEEEDEVL NARGIKRKNP PGRPKNKKVG RHGRYLSVLE  720
TKNRGISKSS NNGTAKKKLS FQDTSLPPDT QLSVVSATSP ISYNEPSFSQ LLEEFDKNRD  780
GSS
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03345.1_g00005.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022552503.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLR0EZH30.0R0EZH3_9BRAS; Uncharacterized protein
STRINGXP_006281824.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-111FAR1-related sequence 5