PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

M-type_MADS

Protein Properties

Length: 354aa MW: 40385.5 Da PI: 9.2177

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_03316.1_g00003.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	66.7	2.3e-21	35	80	6	51
HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +s + +++++R+++++ KA ELS+LC++ev+vi+++s+g+l+++++ Rsa1.0_03316.1_g00003.1 35 SSLKATSLANRQETVFRKARELSILCGVEVCVIYYGSDGELRTWPK 80 78899***************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	8.5E-4	15	81	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.66E-16	36	111	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	11.311	38	82	IPR002100	Transcription factor, MADS-box
CDD	cd00266	3.57E-14	38	106	No hit	No description
Pfam	PF00319	4.6E-12	39	78	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MASSSFFPSS SSSAMTTKKT TKASQLRATL FQKASSLKAT SLANRQETVF RKARELSILC 60 GVEVCVIYYG SDGELRTWPK DREKVKDMAL RYSRLSDVKR HTKQHDLDTF LEEIDDPKNK 120 KKVKLDSGYK YPDWDPRFDN FSAEQLTELI QSLERKQAIM QHRLRAVLES QRQRSMRYMN 180 QEKMQMNHPQ LQQQLPNQAQ SLAPLPNSLT VYQYPNMEMY SELLGAQDTG MNGSLGTNML 240 PYNSFNTNCV NMFPNQFSQN CSKVEVFPQG TGINSMKVED YTGPVWAQGS GINGLQNMDM 300 YRYNNNNNSN TNGFSHQLVQ FPAQRAAAPV YQCIDGSTQN NVPTQMRFNL SQCL

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MASSSFFPSS SSSAMTTKKT TKASQLRATL FQKASSLKAT SLANRQETVF RKARELSILC  60
GVEVCVIYYG SDGELRTWPK DREKVKDMAL RYSRLSDVKR HTKQHDLDTF LEEIDDPKNK  120
KKVKLDSGYK YPDWDPRFDN FSAEQLTELI QSLERKQAIM QHRLRAVLES QRQRSMRYMN  180
QEKMQMNHPQ LQQQLPNQAQ SLAPLPNSLT VYQYPNMEMY SELLGAQDTG MNGSLGTNML  240
PYNSFNTNCV NMFPNQFSQN CSKVEVFPQG TGINSMKVED YTGPVWAQGS GINGLQNMDM  300
YRYNNNNNSN TNGFSHQLVQ FPAQRAAAPV YQCIDGSTQN NVPTQMRFNL SQCL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_03316.1_g00003.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018435453.1	0.0	PREDICTED: agamous-like MADS-box protein AGL103
Swissprot	Q9LSB2	3e-77	AG103_ARATH; Agamous-like MADS-box protein AGL103
TrEMBL	A0A3N6RXJ5	1e-168	A0A3N6RXJ5_BRACR; Uncharacterized protein
STRING	Bo1g117390.1	1e-168	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM566	20	126

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18650.1	4e-70	AGAMOUS-like 103

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]