PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_03305.1_g00007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | E2F/DP | ||||||||
Protein Properties | Length: 367aa MW: 41514.5 Da PI: 5.3484 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 84.1 | 1.1e-26 | 127 | 192 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL+llt+kf++l+ ++e+g ++ln++a+ L +v ++RRiYDi+NVLe+++liek+ kn+irwkg Rsa1.0_03305.1_g00007.1 127 RYDSSLGLLTKKFVNLIIEAEDGSLDLNHCADVL---EV--QKRRIYDITNVLEGIGLIEKTTKNHIRWKG 192 6899******************************...99..****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.7E-28 | 123 | 194 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 1.2E-32 | 127 | 192 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 3.26E-17 | 127 | 190 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF02319 | 7.3E-24 | 129 | 192 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
CDD | cd14660 | 1.22E-39 | 203 | 310 | No hit | No description |
SuperFamily | SSF144074 | 2.62E-28 | 203 | 309 | No hit | No description |
Pfam | PF16421 | 5.0E-26 | 208 | 307 | IPR032198 | E2F transcription factor, CC-MB domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MAATSKSGED PSLSYTHPPP FSFDLLQSLD PRHPPSSTNR TFSVSEPLPN AQSPQIQAQS 60 YSPITHQFKN RNIPGETIDI AKVIVKQESP LENLKRGNKS KVTKLSKASV KREAQQLGGP 120 NGSNNCRYDS SLGLLTKKFV NLIIEAEDGS LDLNHCADVL EVQKRRIYDI TNVLEGIGLI 180 EKTTKNHIRW KGADNLGHLE LGDQISRLKL EVESLQSEES RLDDLIRERQ TALRSLEEDE 240 CSRRYMFMTE EDITSLPRFQ NKTLLAIKAP TASYIEVPDP DEVLSFPQRQ YRMVIRSRMG 300 PIDVYLLSKY KGENSRETNE SDQNTPTGVD TPSLKIVTSD TDLKTDYWFE SEAEVSLTHL 360 WNTFTEN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_A | 2e-23 | 127 | 193 | 7 | 74 | PROTEIN (TRANSCRIPTION FACTOR E2F-4) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in transcriptional repression. May act by repressing E2F-regulated genes in mature differentiated cells, but is not an antagonist of E2FA. Restricts cell division and is involved in the coordination between cell proliferation and endoreduplication during development. May play a role during the transition from skotomorphogenesis to photomorphogenesis. Regulated by phosphorylation-dependent proteolysis via the protein-ubiquitin ligase SCF(SKP2A) complex. {ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:12468727, ECO:0000269|PubMed:16920782, ECO:0000269|PubMed:19662336}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_03305.1_g00007.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by light. {ECO:0000269|PubMed:12468727, ECO:0000269|PubMed:18424613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF400001 | 0.0 | AF400001.1 Thlaspi caerulescens E2F-related transcription factor 2 (E2F2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018488549.1 | 0.0 | PREDICTED: transcription factor E2FC-like | ||||
Swissprot | Q9FV70 | 0.0 | E2FC_ARATH; Transcription factor E2FC | ||||
TrEMBL | V4JZ32 | 0.0 | V4JZ32_EUTSA; Uncharacterized protein | ||||
STRING | XP_006393509.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM808 | 28 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G47870.2 | 0.0 | E2F/DP family protein |
Publications ? help Back to Top | |||
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