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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_03305.1_g00002.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
HSF |
Protein Properties |
Length: 334aa MW: 37959.9 Da PI: 8.2493 |
Description |
HSF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_03305.1_g00002.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HSF_DNA-bind | 114.5 | 6.7e-36 | 35 | 127 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87
Fl+k+y++++d+++++++sw ++ ++f+v+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+ ++ weF+++ Fk
Rsa1.0_03305.1_g00002.1 35 FLTKTYQLVDDPATDHVVSWGDDDTTFIVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFK 111
9*****************************************************************99.........********* PP
XXXXXXXXXXXXXXXX CS
HSF_DNA-bind 88 kgkkellekikrkkse 103
+g+k+ll++i+r+k++
Rsa1.0_03305.1_g00002.1 112 RGEKHLLCEIHRRKTS 127
*************987 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0008356 | Biological Process | asymmetric cell division |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0042802 | Molecular Function | identical protein binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 334 aa
Download sequence Send
to blast |
MAMMVENNYG YGGGGTGERI QLMVEGQGKA VPAPFLTKTY QLVDDPATDH VVSWGDDDTT 60 FIVWRPPEFA RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF KRGEKHLLCE 120 IHRRKTSQML PNQHSPFMTH HPPPQIPFST AGASFFSLPP PVDAADDQYW CESPPPRARV 180 VIPTTVDAQV TALTEDNERL RRSNTVLMSE LAHMKKLYND IIYFVQNHVK PVAPSNTYLS 240 SFLQKQQQPP PPPLDYYTVP NLNALHSPPT SQSSITVLED DTNHESNTRK TKLFGVSLPS 300 SKKRSHHFSD QSTKTRLLLD KSDLGLNLMT ASTR
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Functional Description ? help
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Source |
Description |
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |