PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03249.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HD-ZIP
Protein Properties Length: 301aa    MW: 34622.4 Da    PI: 6.8019
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03249.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.87.8e-18112164456
                              -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              + +++ eq+++Le+ Fe  +++  e++ +LAk lgL+ rq+ +WFqNrRa++k
  Rsa1.0_03249.1_g00001.1 112 KKRLNLEQVRALEKSFELGNKLEPERKMQLAKALGLQSRQIAIWFQNRRARWK 164
                              4568889*********************************************9 PP
2HD-ZIP_I/II124.93.7e-40110201192
              HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                              ekk+rl+ eqv++LE+sFe  +kLeperK++la++Lglq rq+a+WFqnrRAR+ktkqlE+dy++Lk+++d lk++n++L +++++
  Rsa1.0_03249.1_g00001.1 110 EKKKRLNLEQVRALEKSFELGNKLEPERKMQLAKALGLQSRQIAIWFQNRRARWKTKQLERDYDSLKKQFDILKSDNDSLLAHNKK 195
                              69************************************************************************************ PP

              HD-ZIP_I/II  87 Lreelk 92 
                              L++e+ 
  Rsa1.0_03249.1_g00001.1 196 LHAEVV 201
                              **9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.84E-1998168IPR009057Homeodomain-like
SMARTSM003896.0E-16109170IPR001356Homeobox domain
PROSITE profilePS5007116.455110166IPR001356Homeobox domain
CDDcd000862.03E-15111167No hitNo description
PfamPF000464.3E-15112164IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.0E-18114174IPR009057Homeodomain-like
PRINTSPR000311.1E-5137146IPR000047Helix-turn-helix motif
PROSITE patternPS000270141164IPR017970Homeobox, conserved site
PRINTSPR000311.1E-5146162IPR000047Helix-turn-helix motif
PfamPF021833.3E-15166205IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MYEEEKNNIV NSQEGLRLEM AFPQHGFMFQ QLHEDNAHHL PSPTSLPSCP PHLFYGGGNY  60
VMNRSMSFTG VSDHHHITQK SPTPTNMNDQ DQVGDEDNLS DDGSHMMLGE KKKRLNLEQV  120
RALEKSFELG NKLEPERKMQ LAKALGLQSR QIAIWFQNRR ARWKTKQLER DYDSLKKQFD  180
ILKSDNDSLL AHNKKLHAEV VALKKQDRKE SGKIKRESAE ASWSNNESTE NNNNSSEGLK  240
DLFPSSIRSV TTSTTSAHID HQMVQDQGFC NMFNSIDETT SAGYWAWPDQ QQPHHNHHHF  300
N
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158166RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03249.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2293640.0AK229364.1 Arabidopsis thaliana mRNA for homeobox protein, complete cds, clone: RAFL16-61-C06.
GenBankBT0440590.0BT044059.1 Arabidopsis thaliana unknown protein (At5g15150) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018475041.10.0PREDICTED: homeobox-leucine zipper protein HAT7-like
SwissprotQ004661e-180HAT7_ARATH; Homeobox-leucine zipper protein HAT7
TrEMBLA0A397ZYL10.0A0A397ZYL1_BRACM; Uncharacterized protein
STRINGBo3g010120.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30952666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15150.11e-146homeobox 3