PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03242.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NF-YB
Protein Properties Length: 602aa    MW: 68486 Da    PI: 8.8898
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03242.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix77.32.4e-24218300185
                 trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                              rW+++ev+aLi+ r+e+ee+ +    k++ W e+s++m+ +g+ers+k+Ckekwen+nk+yk++ eg kk+ +e+++t +yf++l
  Rsa1.0_03242.1_g00004.1 218 RWPQEEVQALIASRSEVEEKTGVV-HKGAIWNEISARMKVKGYERSAKKCKEKWENMNKYYKRVMEGCKKQ-PEHTKTRSYFEKL 300
                              8********************998.89******************************************95.9**********98 PP
2NF-YB171.21.1e-53429525197
                    NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86 
                              vreqdrf+Pianv+rim+++lP +akis+d+ket+qecvse+isfvt+ea+++cqre+rkti+++d+lwa+++lGf+dyvepl++y
  Rsa1.0_03242.1_g00004.1 429 VREQDRFMPIANVIRIMRRILPVHAKISDDSKETIQECVSEYISFVTGEANERCQREQRKTITAEDVLWAMSKLGFDDYVEPLTLY 514
                              59************************************************************************************ PP

                    NF-YB  87 lkkyrelegek 97 
                              l++yreleg++
  Rsa1.0_03242.1_g00004.1 515 LHRYRELEGDR 525
                              *********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007176.4E-4215276IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-5217274IPR009057Homeodomain-like
PfamPF138377.1E-18217300No hitNo description
SuperFamilySSF466893.03E-5217303IPR009057Homeodomain-like
CDDcd122031.79E-22217280No hitNo description
PROSITE profilePS500907.491218274IPR017877Myb-like domain
Gene3DG3DSA:1.10.20.101.1E-48425527IPR009072Histone-fold
SuperFamilySSF471132.35E-36432526IPR009072Histone-fold
PfamPF008087.3E-24435499IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006157.0E-16463481No hitNo description
PROSITE patternPS006850466482IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006157.0E-16482500No hitNo description
PRINTSPR006157.0E-16501519No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0033613Molecular Functionactivating transcription factor binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MLDDKRYQPA VLRQPDLAPP PQKLKPIRCL VKPSSEDPHP LDILAGSLDR LPEMGGFLEV  60
GCFDAPLGSN IANAWVWQGS SADSDSEGES SQGVDRAVTG KRKRQTREKL ERFMEKLVGT  120
MMKRQEKMGN QLINVMEKME RERIKSEEAW RQQEMERMKQ NEEARMQEIS RSSSLISFIK  180
NVIGEEIKIP QPLQTIPKQN EWDQTQGEVK FVFPSGRRWP QEEVQALIAS RSEVEEKTGV  240
VHKGAIWNEI SARMKVKGYE RSAKKCKEKW ENMNKYYKRV MEGCKKQPEH TKTRSYFEKL  300
GNFYKTNSLR VCTLYCVVLS LEVIRILYYV TAMGNEKGSS VASKTRCGGC EGYASIFRAF  360
SFLYMHRPKI VTLKKDMERG VSHGYGKFSL NNTNPSEPAK FLMAEGSMQL SELNQANKTA  420
NGCEEECTVR EQDRFMPIAN VIRIMRRILP VHAKISDDSK ETIQECVSEY ISFVTGEANE  480
RCQREQRKTI TAEDVLWAMS KLGFDDYVEP LTLYLHRYRE LEGDRGVNYS AGSVSMISSS  540
GFKRPNGTMA EYGAYGAVPG NHMAPYHYPH QNGFPNSKMS GSSSASSGAS VEIFPNAQQH  600
KY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A4e-59428520597NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03242.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2367851e-172AC236785.1 Brassica napus clone JBnB015G17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018434457.10.0PREDICTED: trihelix transcription factor GTL1-like
TrEMBLA0A3P6ET510.0A0A3P6ET51_BRAOL; Uncharacterized protein
STRINGBo7g077820.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94112736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47660.11e-121Trihelix family protein