PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03235.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HD-ZIP
Protein Properties Length: 747aa    MW: 83506.1 Da    PI: 6.9987
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03235.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox665.2e-2196151156
                              TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              r+k +++t++q++ +e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  Rsa1.0_03235.1_g00002.1  96 RKKYHRHTTDQIRHMEALFKETPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 151
                              7999************************************************9877 PP
2START230.45.1e-722574861206
                              HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT- CS
                    START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetl 76 
                              e+a++a+ el+k+a+++ep+W +s     e++n+de+l++f+++++      +++ea+r++g+v+m++++l ++++d+  qW+e++
  Rsa1.0_03235.1_g00002.1 257 EIANRATLELQKMATSGEPLWLRSLetgrEILNYDEYLKEFPQAQGssfhgrKTIEASRDVGIVFMDAHKLAQSFMDVE-QWKEMF 341
                              578999***************************************9*********************************.****** PP

                              S....EEEEEEEECTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EE CS
                    START  77 a....kaetlevissg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRael 147
                              a    ka+t++vi++g       ga+qlm+ e+q+l+p+vp R+++fvR++rql+ ++w+ivdvSv++e+++++   + s+ R+++
  Rsa1.0_03235.1_g00002.1 342 AclisKATTVDVIRQGegpsridGAIQLMFGEMQLLTPVVPtREVYFVRSCRQLSPEKWAIVDVSVSVEEDNNNtekDGSLLRCRK 427
                              ********************************************************************999998878889****** PP

                              SSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                    START 148 lpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                              +pSg++ie++snghskvtwveh dl++++++ l+rs+v++gla+ga++wvatlq +ce+
  Rsa1.0_03235.1_g00002.1 428 RPSGCIIEDTSNGHSKVTWVEHLDLSASTVQPLFRSFVNTGLAFGARHWVATLQLHCER 486
                              *********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-2282147IPR009057Homeodomain-like
SuperFamilySSF466898.36E-2088154IPR009057Homeodomain-like
PROSITE profilePS5007117.81593153IPR001356Homeobox domain
SMARTSM003899.6E-1895157IPR001356Homeobox domain
PfamPF000462.6E-1896151IPR001356Homeobox domain
CDDcd000863.46E-16100151No hitNo description
PROSITE patternPS000270128151IPR017970Homeobox, conserved site
PROSITE profilePS5084843.936248489IPR002913START domain
SuperFamilySSF559619.16E-33251486No hitNo description
CDDcd088751.10E-109252485No hitNo description
SMARTSM002341.3E-80257486IPR002913START domain
PfamPF018521.0E-64257486IPR002913START domain
Gene3DG3DSA:3.30.530.209.5E-8311485IPR023393START-like domain
SuperFamilySSF559613.71E-16515733No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 747 aa     Download sequence    Send to blast
MSMAVEMSSK QPTKDFFSSP ALSLSLAGIF RNASSGSANP EEDFLGRRVA DDEDRTVEMS  60
SENSGPTRSR SEDNLEGEED QEEEDGAGNK GNKRKRKKYH RHTTDQIRHM EALFKETPHP  120
DEKQRQQLSK QLGLAPRQVK FWFQNRRTQI KAIQERHENS LLKAELEKLR DENKAMRESF  180
SKANSSSCPN CGGGGGSPDD LHLENTKLKA ELDKLRAALG RTPYPLQASC SDDQQRRVGS  240
LELYTGVFAL EKSRILEIAN RATLELQKMA TSGEPLWLRS LETGREILNY DEYLKEFPQA  300
QGSSFHGRKT IEASRDVGIV FMDAHKLAQS FMDVEQWKEM FACLISKATT VDVIRQGEGP  360
SRIDGAIQLM FGEMQLLTPV VPTREVYFVR SCRQLSPEKW AIVDVSVSVE EDNNNTEKDG  420
SLLRCRKRPS GCIIEDTSNG HSKVTWVEHL DLSASTVQPL FRSFVNTGLA FGARHWVATL  480
QLHCERLVFF MATNVPTKDS LGVTTLAGRK SVLKMAQRMT QSFYRAIAAS SYHQWNKITT  540
KTGQDMRVSS RKNLHDPGEP TGVIVCASSS LWLPVSPTLL FDFFRDESRR HEWDVLSNGA  600
HVQSIVSLSK GQDRGNSVSI QTVKSREKST WVLQDSCTNS YESVVVYAPV DINTTQLVIA  660
GHDPSNIQIL PCGFSIIPDG VESRQLVISS AQEDRNTQGG CLLTLALQTL INQSPAAKLN  720
MESVESVTNL VSVTLHNIKR SLQIEDC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19397RKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03235.1_g00002.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1882100.0KF188210.1 Brassica villosa BVGL2 (BVGL2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018445476.10.0PREDICTED: homeobox-leucine zipper protein GLABRA 2
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLU3PGI60.0U3PGI6_9BRAS; BVGL2
STRINGBo6g079990.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM123702731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]