PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_03168.1_g00005.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

BES1

Protein Properties

Length: 333aa MW: 35856.1 Da PI: 8.2154

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_03168.1_g00005.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	152.3	3.6e-47	2	163	1	149
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.......... 76 ++++r+ptw+ErEnnkrRERrRRaiaaki++GLR++Gny+lpk++DnneVlkALc+eAGw+ve+D + + Rsa1.0_03168.1_g00005.1 2 TSGTRMPTWRERENNKRRERRRRAIAAKIFTGLRMYGNYELPKHCDNNEVLKALCNEAGWIVEPDVSEHDLTCAGAfpgsycfanv 87 5899***********************************************************999995554443323322112 PP DUF822 77 .eeaeaagssasaspesslqsslkssalaspvesysaspksssfpspssldsislasa..asllpvlsvlslvsss 149 + + ++s++p+ + + + ++ + + + sp ss+f+sp+s+++++l+s +sl+p+l++ls++sss Rsa1.0_03168.1_g00005.1 88 fLARSLKSMFKSREPSPMIFCRGQGCSRPVERMEIGGSPCSSNFMSPASSSFANLTSGdgQSLIPWLKHLSTTSSS 163 2223333334444444444466677778888888899********99999998788********997776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	4.7E-45	3	158	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MTSGTRMPTW RERENNKRRE RRRRAIAAKI FTGLRMYGNY ELPKHCDNNE VLKALCNEAG 60 WIVEPDVSEH DLTCAGAFPG SYCFANVFLA RSLKSMFKSR EPSPMIFCRG QGCSRPVERM 120 EIGGSPCSSN FMSPASSSFA NLTSGDGQSL IPWLKHLSTT SSSSASSSSR LPNNYLYISG 180 GSISAPVTPP LSSPTTSRGM NQINNPFFVS STPPSPTRHH QTVPDSEWFS GIQLAQSVPA 240 SPTFSLVSQN PFGFKEAGGG GGSRMWTPGQ SGTCSPAIQT GDVPMSEAVV APPPEFAFGS 300 NANGLVKAWE GERIHEVSGS DDLELTLGNS STR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	2e-16	6	74	372	440	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	2e-16	6	74	372	440	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	2e-16	6	74	372	440	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	2e-16	6	74	372	440	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_03168.1_g00005.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018472122.1	1e-167	PREDICTED: BES1/BZR1 homolog protein 4-like
Swissprot	Q9ZV88	1e-136	BEH4_ARATH; BES1/BZR1 homolog protein 4
TrEMBL	A0A3P6APK6	1e-150	A0A3P6APK6_BRACM; Uncharacterized protein
STRING	Bra008378.1-P	1e-149	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1917	27	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78700.1	1e-110	BES1/BZR1 homolog 4