PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03112.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family TCP
Protein Properties Length: 351aa    MW: 40247.8 Da    PI: 5.9212
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03112.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP127.21.7e-39842312129
                      TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....ssssasec.....eaess 78 
                              a+kkdrhski T +g+RdRRvRls+ +a++fFdLqd+LGfdk+skt++WLl+++k+aikel++     + +++ ++     e +++
  Rsa1.0_03112.1_g00001.1  84 AVKKDRHSKIQTGQGLRDRRVRLSIGIARQFFDLQDMLGFDKASKTLDWLLKKSKRAIKELVQEkklnN-TNE-DFrniggEVGEE 167
                              89**************************************************************66642.222.112344422222 PP

                      TCP  79 sssasnsssg............kaaksaakskksqksaasalnlak.esrakarararertrek 129
                              ++++++++ +            ++   + k+ +++k + +++n++   s+akar +are tre 
  Rsa1.0_03112.1_g00001.1 168 EEEEEEDGDKrfvygsspdsceEEVVCEVKKAHKRKTKIEVSNISSkGSNAKARGKAREITREM 231
                              22222222225667788855543333333344444444444555445777*********99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.4E-3985231IPR005333Transcription factor, TCP
PROSITE profilePS5136934.5286144IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MSFSNNDYNN GNNRVYPLSL YFSPLAGYQD IIRSPYNHQP TPSPGHMASA VPESLINYMT  60
FSSNHAVNQQ GFEIPEVSRE IKKAVKKDRH SKIQTGQGLR DRRVRLSIGI ARQFFDLQDM  120
LGFDKASKTL DWLLKKSKRA IKELVQEKKL NNTNEDFRNI GGEVGEEEEE EEEDGDKRFV  180
YGSSPDSCEE EVVCEVKKAH KRKTKIEVSN ISSKGSNAKA RGKAREITRE MTYDHPETIS  240
EITQKTEIMD QPKRSIIFNE GEDMIHSLYK EATQEFESQE CILSKTKVNL PTNMDHSYNQ  300
NYETSMLKDQ GSSSNYNNIL PQNLDFYYDQ NPFIDQPFCA ATNTSFPRGF P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-1391144154Putative transcription factor PCF6
5zkt_B2e-1391144154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in petal morphogenesis. {ECO:0000269|PubMed:17940055}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03112.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444831.10.0PREDICTED: transcription factor TCP1
SwissprotQ9FYG71e-155TCP1_ARATH; Transcription factor TCP1
TrEMBLM4CJ280.0M4CJ28_BRARP; Uncharacterized protein
STRINGBra004212.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67332744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.21e-144TCP family protein
Publications ? help Back to Top
  1. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]