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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_02987.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | B3 | ||||||||
Protein Properties | Length: 213aa MW: 24309.4 Da PI: 6.4056 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.4 | 8.2e-16 | 30 | 120 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 ffkv +ps + ++ +l++p kf++ g + + s +tl+++ g + ++kl ++ +++++l GW+eF++a+ + eg f+ F ++g Rsa1.0_02987.1_g00005.1 30 FFKVVLPSTMKRN-MLMIPPKFVKLQG-S-TLSEFVTLKTPVGFRRSIKL--KRIGEEIWLHVGWSEFAEAHSIGEGHFLFFDYKG 110 7888877766665.6********5555.4.48889***************..********************************** PP SSEE..EEEEE- CS B3 87 rsefelvvkvfr 98 +s+f v++f+ Rsa1.0_02987.1_g00005.1 111 NSSF--SVMIFN 120 *999..888876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.55E-22 | 24 | 124 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.4E-21 | 24 | 124 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.08E-14 | 28 | 120 | No hit | No description |
PROSITE profile | PS50863 | 12.167 | 29 | 122 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-13 | 30 | 120 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.5E-16 | 30 | 122 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MVTTRQTKAR VTTFSHRRQL PETDSSVKKF FKVVLPSTMK RNMLMIPPKF VKLQGSTLSE 60 FVTLKTPVGF RRSIKLKRIG EEIWLHVGWS EFAEAHSIGE GHFLFFDYKG NSSFSVMIFN 120 VSACEIDYPL DAVHISDSDD DVMDVTDEGF LGTQGARRND QSVDGGGTEH NSNKRPRDEE 180 FEKILNDVDG INSIKPLEEE EEGKRVFRGH QFF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_02987.1_g00005.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC240102 | 1e-139 | AC240102.1 Sisymbrium irio clone SIR-40E09, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018492012.1 | 1e-157 | PREDICTED: B3 domain-containing protein At3g18960 | ||||
Swissprot | Q84R27 | 4e-98 | Y3896_ARATH; B3 domain-containing protein At3g18960 | ||||
TrEMBL | A0A3P6F1G9 | 1e-122 | A0A3P6F1G9_BRAOL; Uncharacterized protein | ||||
STRING | Bra022374.1-P | 1e-118 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1591 | 25 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18960.1 | 2e-99 | B3 family protein |
Publications ? help Back to Top | |||
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