PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02944.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 296aa    MW: 32338.7 Da    PI: 5.883
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02944.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA42.21.1e-13226255128
                     GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGl 28 
                              C++Cg  +  Tp++Rrgp+g++tLCnaCGl
  Rsa1.0_02944.1_g00003.1 226 CRHCGIGEksTPMMRRGPEGPRTLCNACGL 255
                              ****865556*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009797.6E-1179114IPR010399Tify domain
PROSITE profilePS5132014.51379114IPR010399Tify domain
PfamPF062002.9E-1181113IPR010399Tify domain
PROSITE profilePS5101713.166149191IPR010402CCT domain
PfamPF062031.7E-16149191IPR010402CCT domain
SMARTSM004016.0E-7220274IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-9221261No hitNo description
Gene3DG3DSA:3.30.50.102.0E-11224256IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.35E-10225255No hitNo description
PfamPF003204.1E-11226255IPR000679Zinc finger, GATA-type
PROSITE patternPS003440226253IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MDDDDELHGS NGRMHIGEAQ ESMHHVHYGH HALQHIHNGS GGMVDDQADG GGMSDGVETD  60
GPSHPGNITD NRGEVVDRGS EQGDQLTLSF QGQVYVFDSV LPEKVQAVLL LLGGREVPQV  120
PPTGLGAPHQ NNRVLGLPGT PQRFSMPQRL ASLLRFREKR KERNFDKKIR YTVRKEVALR  180
MQRNKGQFTS ANSNNGEAAS DGSNWGTNET WAIEESSEAQ NQETSCRHCG IGEKSTPMMR  240
RGPEGPRTLC NACGLIDLSR GAPQTAQNLA IHKNEDANLE ADQMMVTVAN DISNSQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02944.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018449143.10.0PREDICTED: GATA transcription factor 28
SwissprotQ8H1G01e-176GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A3P6B4700.0A0A3P6B470_BRAOL; Uncharacterized protein
STRINGBo3g181450.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36842659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.21e-178ZIM-LIKE 2