PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02939.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HD-ZIP
Protein Properties Length: 591aa    MW: 64013.6 Da    PI: 5.3833
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02939.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox51.41.9e-162579357
                             --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                 Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                             k++++t+ ql+ Lee Fe+++ +  +++  LA+k+gL+ +qV +WFqNrRa+ k+
  Rsa1.0_02939.1_g00003.1 25 KKRKLTPFQLRLLEESFEEDKRLEPDRKLWLAEKMGLQPSQVAIWFQNRRARFKN 79
                             56799***********************************************995 PP
2HD-ZIP_I/II106.81.6e-3425115292
              HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                              kkr+l+  q++lLEesFee+++Lep+rK  la+++glqp qva+WFqnrRAR+k++qlE d+++Lk++y +lk++++ L +++++L
  Rsa1.0_02939.1_g00003.1  25 KKRKLTPFQLRLLEESFEEDKRLEPDRKLWLAEKMGLQPSQVAIWFQNRRARFKNRQLEIDCDSLKASYAKLKTDRDILFRQNQAL 110
                              9************************************************************************************* PP

              HD-ZIP_I/II  88 reelk 92 
                               ++++
  Rsa1.0_02939.1_g00003.1 111 INKVA 115
                              98875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.27E-171582IPR009057Homeodomain-like
PROSITE profilePS5007116.6492080IPR001356Homeobox domain
SMARTSM003891.1E-162384IPR001356Homeobox domain
CDDcd000864.21E-172581No hitNo description
PfamPF000467.6E-142578IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.8E-172784IPR009057Homeodomain-like
PROSITE patternPS0002705578IPR017970Homeobox, conserved site
PfamPF021833.6E-1281121IPR003106Leucine zipper, homeobox-associated
Gene3DG3DSA:2.130.10.307.4E-94213581IPR009091Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II
SuperFamilySSF509851.27E-87215581IPR009091Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II
PROSITE profilePS5001215.248215266IPR000408Regulator of chromosome condensation, RCC1
PRINTSPR006332.1E-20216232IPR000408Regulator of chromosome condensation, RCC1
PfamPF004152.6E-10216263IPR000408Regulator of chromosome condensation, RCC1
PRINTSPR006332.1E-20250263IPR000408Regulator of chromosome condensation, RCC1
PfamPF004153.1E-12267315IPR000408Regulator of chromosome condensation, RCC1
PROSITE profilePS5001214.926267318IPR000408Regulator of chromosome condensation, RCC1
PRINTSPR006332.1E-20269285IPR000408Regulator of chromosome condensation, RCC1
PROSITE patternPS006260305315IPR000408Regulator of chromosome condensation, RCC1
PfamPF004152.1E-12318367IPR000408Regulator of chromosome condensation, RCC1
PROSITE profilePS5001213.258319370IPR000408Regulator of chromosome condensation, RCC1
PRINTSPR006332.1E-20357373IPR000408Regulator of chromosome condensation, RCC1
PROSITE patternPS006260357367IPR000408Regulator of chromosome condensation, RCC1
PROSITE profilePS5001211.931371425IPR000408Regulator of chromosome condensation, RCC1
PfamPF004153.4E-7372422IPR000408Regulator of chromosome condensation, RCC1
PRINTSPR006332.1E-20373387IPR000408Regulator of chromosome condensation, RCC1
PROSITE profilePS500129.76431474IPR000408Regulator of chromosome condensation, RCC1
PRINTSPR006332.1E-20464482IPR000408Regulator of chromosome condensation, RCC1
PROSITE patternPS006260516526IPR000408Regulator of chromosome condensation, RCC1
PRINTSPR006332.1E-20525546IPR000408Regulator of chromosome condensation, RCC1
PfamPF004153.6E-10529581IPR000408Regulator of chromosome condensation, RCC1
PROSITE profilePS5001211.911530584IPR000408Regulator of chromosome condensation, RCC1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MSNTETNTVD EDDVCESYNT RETTKKRKLT PFQLRLLEES FEEDKRLEPD RKLWLAEKMG  60
LQPSQVAIWF QNRRARFKNR QLEIDCDSLK ASYAKLKTDR DILFRQNQAL INKVALLKEE  120
LKIQEKLETQ SIETEKLGEE GSSVRSNNTQ YSEEEEGLGH NQYSFPELAA LGFYYDPTLC  180
ASNLGLRGRS VTHGVRDGGV MAQHGVTPPA DEEEEQVWSW GAGTDGQLGT ATLQDEHIPQ  240
LISLTSLASV SMLACGGAHV IALTSGGKVL TWGRGNSGQL GHGDILDSSL PKPVSFFDDY  300
VVTQASAGWS HSAFVSDSGC LFTCGNGSFG QLGHGDSTSL CSPTKVSYFV GKTVKMVACG  360
MRHSLVLFAG NQVCGFGSGK RGQLGVTSNG TKSVVNLPCV VSGLEDVEVV RIAANGDHSA  420
AISGLTLLTD GQMFSWGRGF SGSPDVQTPQ CLPSSLSFRE VALGWNHALL LTVDGQVFKL  480
GNTLDKQSEK QQLQVDSSEP LLEKVPGFDG VKAVQIAAGA EHSAAVTDNG EVQTWGWGEH  540
GQLGLGNTND QNNPQLVRLG SVDKRTKETK VYCGSGFTYA VRRIQQLSSS S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dnu_A2e-432105876372AT5g63860/MGI19_6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02939.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018492834.10.0PREDICTED: ultraviolet-B receptor UVR8
TrEMBLA0A078FP780.0A0A078FP78_BRANA; BnaC05g19660D protein
STRINGXP_010477773.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1020022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27045.11e-91HD-ZIP family protein