PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02931.1_g00009.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 272aa    MW: 28771 Da    PI: 5.5421
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02931.1_g00009.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.00019139160223
                              EETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                              +C+ Cg+ F ++     H+r+H
  Rsa1.0_02931.1_g00009.1 139 VCNVCGRAFHSWKAVFGHLRSH 160
                              6*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.829138165IPR007087Zinc finger, C2H2
PROSITE patternPS000280140160IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MSNPEKMKVD DGSEKEREDS SDEQSSDEES AMREIVLALP ALSITSGTIG VSIAVDEEAE  60
ARLNEQAVVA AELVIAAAEE EVMKEKSDGK KKKVRRHRKT MKLNDDDEAC GSSKGGGEAT  120
KKPRKKTSEF TNLPRGPPVC NVCGRAFHSW KAVFGHLRSH KDRNYRGFLP PPKFTPPIRS  180
VMIPGPNSAF VRVVARGGSS GGVVAAGGVV ASGGGGGGGA TGGEGGRGGS GMDMNADRVE  240
EDNQEVTESG TVAKFDLNKS PPKDDEEEEK TK
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02931.1_g00009.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469571.10.0PREDICTED: uncharacterized protein LOC108841296
TrEMBLA0A0D3A1Q61e-131A0A0D3A1Q6_BRAOL; Uncharacterized protein
TrEMBLA0A3P6ESB11e-131A0A3P6ESB1_BRAOL; Uncharacterized protein
STRINGBo1g006320.11e-131(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58752241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35610.13e-41C2H2 family protein